| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_2006 |
|---|
| Symbol | |
|---|
| ID | 4270480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | + |
|---|
| Start bp | 2275718 |
|---|
| End bp | 2277907 |
|---|
| Gene Length | 2190 bp |
|---|
| Protein Length | 729 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638126762 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_742838 |
|---|
| Protein GI | 114321155 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.475164 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTCT CTGATCATAG TGAACACTGG GTGGAGCGGA TCAGCCGGGG TCTGCTCGGC
CGGCACGCCA CGCCTACCGG CCACACCAGC CGCCGACTGC TGTTCTGGGC GCCGGCAATG
GGGCTGGCTG TTCTGCTGAC AGGGCTGTTG CTCGGCCTCG CCTATCTCTC CCTCTCCGCG
CTGCCCGCCG GCGCCGACCC AACACCGCTG GTGGTCGCCT TCGGCGCTGC GGGGCTGCTC
CTGCTGGCGG CGATCACGGC CATCTGGCTG TTGCTGGATG CCACCGTGCT GCGCTCCCTG
TCCGCGCTGG CCCGCGATGC GGCCATACTG GCCTACACCA ACCCCGATCA CCGGCTTCAG
CTGCCGTCGG TGCACCTGCT CGGCGAGTTG CCCGGGACGC TGCGCAACCT CGCCCGCCAG
TTGCAGGTCC GGCGCCGGGA GGTAGAGGCC GCCGCGGCCA CGGCCGCCGA ACAGGCCGAG
GCGCAGAAGG CGCGGCTGGA GGTGGTGCTG CGCGCCATCC GGCAGGGGGT CGTGGTCTGT
GATGCCGACG GACGGATCCT GCTCTACAAC CCCGCCGCCG GTGAGCTGCT CCACAGCGAC
GCCCTGGGGC TTGGCCGCTC CATCCATGAA CTGTTGAACC CAGCCGCCGT TGAGCACCCC
CGACAACTGC TGCAACACCG ACTGCGCCAG GATTCGGACG ACCCGGTCAT GGACGAGGGG
GTGGAGTTCG TCTGTACCAC GGTCGATGAC GGCGCCCTGC TCCGCTGCCA GATGAGTCTG
CTGCCGACCC ACGGCCCGCT GCGCTCGGCC TTCGTCATCA CCCTGGAGGA CATCACCCGC
CGGATCGAAG GCGTGGCCCG CCGTGACCAA GCCCTGCGCA GCGCCGTGGA GGCCCTGCGC
TCGCCCCTGG CCGCGGTGTC GGTGGCGGCG GAGCTGCTCA ACGAGTACCC GCAGATCGAC
GATGCCCGCC GACGCCGGTT CATCGACATC CTGGCCAAAG AGAGCCACGT GCTGGTCCAG
CGCTTCGAAC AAATCGCGGA GGCCACTCAG GAGAACGTCT CCGCCCCCTG GACCATGGCC
GATATCAGCA GCGACGATTT GGTGGACAGC GTGTTGCTGC GCCACCGCGA CACCCTGCCC
CGCGTGGCGC TGGCTGGCCT GCCCCTATGG CTCCATGCGG AGAGCCACGC CATCGGACTC
GTGCTCACCC ATCTGTTGCA CCGTCTGGGA CGGGACCACG GCGTCCTGGC CGTGCGCATC
GAGGCGCTGA TGGGCAACCG CCGGGTGTAC CTGGACATCT CCTGGGCGGG CGAGCCGGTG
CCGGGCCCCA CCCTAGAGCA GTGGCTTGAG ACCCCGTTGC CGGAGGCCAT AGGGGAATTG
AACGCCCGCG CCGTGCTCGA GCGGCACAAC AGCCTGGCCT GGAGTCAACG GGACCGGCGA
ACGCCGGGGT GGGCGTGCCT GCGCATCCCG TTGCCTGCCT CCAGCCGGCA ATGGAACCCG
CCCGGGGAGA GCCTCCCCCC GCGCCCGGAA TTCTATGACT TCTCTCTCAT CGACCAGGCC
GCGGACCAGG GCGCTCTCCT CGACCGGCCC CTGGACGCGT TGAACTACGT GGTGTTCGAC
ACCGAGACCA CCGGCCTGTC TCCAGCGGAG GGTGACGAGA TCGTCTCCAT CGCCGGGGTG
CGAATGGTCA ATGGCCGCCT CCTGGACGGC GAGCGCTTCG AGCAACTGGT CAACCCCGGC
CGGACCATCC CCCGCAGCTC GATCCTGTTC CACGGCATTC ACGATACGAC GGTCGCGGAT
AAGCCCCGCA TCGAAACGGT ACTGCCGCGA TTCCACACCT TCGTCGGCGA CTCAGTGCTG
GTCGCCCACA ACGCCGCCTT CGACATGAAG TTCATCCGAC TGAAGGAGCG GCGCTGCGGC
GTGCGCTTCG ACAACCCGGT TCTGGACACG CTGCTGCTCT CGGTCTTTCT CCACGACCAC
ACCGCGGACC ACACCCTCGA GGCCATCGCC GCTCGGCTTG GGGTGGAGGT GACCGCGCAG
CACACCGCCT GGGGCGATGC CCTGGTCACG GCACGGGTCT TCGCCTGCCT GTTACCGCTA
CTGCGCGAAC GGGGGGTCCA CACGCTAAGG GACGCGGTGG CGGCATCAGA GCGGATGGTG
GAGGTACGCC GGCAACAGGC GCAGTTCTGA
|
|---|
| Protein sequence | MSVSDHSEHW VERISRGLLG RHATPTGHTS RRLLFWAPAM GLAVLLTGLL LGLAYLSLSA
LPAGADPTPL VVAFGAAGLL LLAAITAIWL LLDATVLRSL SALARDAAIL AYTNPDHRLQ
LPSVHLLGEL PGTLRNLARQ LQVRRREVEA AAATAAEQAE AQKARLEVVL RAIRQGVVVC
DADGRILLYN PAAGELLHSD ALGLGRSIHE LLNPAAVEHP RQLLQHRLRQ DSDDPVMDEG
VEFVCTTVDD GALLRCQMSL LPTHGPLRSA FVITLEDITR RIEGVARRDQ ALRSAVEALR
SPLAAVSVAA ELLNEYPQID DARRRRFIDI LAKESHVLVQ RFEQIAEATQ ENVSAPWTMA
DISSDDLVDS VLLRHRDTLP RVALAGLPLW LHAESHAIGL VLTHLLHRLG RDHGVLAVRI
EALMGNRRVY LDISWAGEPV PGPTLEQWLE TPLPEAIGEL NARAVLERHN SLAWSQRDRR
TPGWACLRIP LPASSRQWNP PGESLPPRPE FYDFSLIDQA ADQGALLDRP LDALNYVVFD
TETTGLSPAE GDEIVSIAGV RMVNGRLLDG ERFEQLVNPG RTIPRSSILF HGIHDTTVAD
KPRIETVLPR FHTFVGDSVL VAHNAAFDMK FIRLKERRCG VRFDNPVLDT LLLSVFLHDH
TADHTLEAIA ARLGVEVTAQ HTAWGDALVT ARVFACLLPL LRERGVHTLR DAVAASERMV
EVRRQQAQF
|
|---|
| |