| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_1930 |
|---|
| Symbol | |
|---|
| ID | 4270131 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | - |
|---|
| Start bp | 2194156 |
|---|
| End bp | 2196363 |
|---|
| Gene Length | 2208 bp |
|---|
| Protein Length | 735 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638126684 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
|---|
| Protein accession | YP_742762 |
|---|
| Protein GI | 114321079 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.737816 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTGGCG TAAGCGCACA ACTCGAGACC CAGCAGGCGA TCCAGGACCT GATCGCGCGG
CATGCGCCGC TCGACGAGAT CCTGGCCGCC ATCACCCGGA TGATCGAGGA GCACCTGCCA
GGGGCCCTCT GTTCGATCAT GCTGGCCGAT CCGGAAGAGC GCACCCTCAA CCTCAGCGGT
GGTCACAGCT TCTCCGAGCG CTTCTGTCAG GCCATGCAGG GAATCCCGGT GGGCCCCGGG
ATCGGCACCT GCGGCAGCGC AGCCCACGAA CGGCGCCTGG TGGCCACCGC CGATATCATG
GCGGATCGGA GCTGGAACGG GTTTCACGAT TTGGCCCGGG ACGAGGGGGT GCGCGCCTGT
TGGTCCGTGC CAGTGATCGC CCGCAGCGGG GCGCTTCTGG GCACCTTCGC CACCTACTAC
CGTCAACCGG GCGAGCCGAC GGCGCATGAT CAGGCACAGA TCCAGCGCGC CGCCGGGCTG
GTGGCCCTGG CGGTGGAACG CCAGCTCGAC CGGCGGGCGC TGCAGGAGGC CGAACAGCGT
TACCGCTCGT TGTTCACCGA GCACCCGGAT GCGGTGTTCC AAGTGGACCT GGAGGGGCGG
CTGCGGGCGG CCAACCGTTC CGCGACCCGA CTGATCGGAC TGCCGGAGTC CGAGCTGCTC
GGACGCCATT ACCATGCGTT TGTCTTCAGT GAAGACCGGC GCCGCAGCGA TGCGGCCTTC
GAGGCCGTAT GCCGCGGCAA GGCCCAGCAC TACGAGGTGC AGGCCCGGAC CGCCAATGGG
AGCAAGGTAG AGTTGGAGAT CACCAACCTG CCGATCATTG TCGATGACCG GGTGGTCGGT
ATCTACGGCA TCGCCCGTGA TGTCACCCTG CGCAAGCAAT ACGAGGCGCG CCTGGCCTAT
TACGCCAGCC ACGACACCAT CACCGGGTTG CCCAACCGCC GCGAGTTTGA GTCGCGGCTG
CGCCACGACT TTTATCTGTG TCGCCAGCAC AACGATCTGT TGGCCGTGCT CTATATCGAC
CTGGACGATT TCAAGCCGGT GAATGACAGC CTGGGCCACG CCTTTGGCGA CCAGTTGCTG
GTCGCCGCCG CCCGCCGCCT GGAGCGGCTG CTCGGGCCCA GTGACACGCT GTCGCGGTTC
GGCGGTGATG AGTTCGTCAT GCTGTTACCC GGGTTGTCCG GGGAGGCGGA GGCGCTGGCG
GTGGCCGATC GTGTGCTCAC GCTGTTTAAG CGCTCCCACA GCCTGGGCCG GCACGAGGTG
CACATCAGCG CCAGCATTGG CATCGCCCTG AACCACCGGG ATGTGAAAAG CCCGGAGGAG
ATGGTGCAGT TCGCCAACCG GGCGATGCAG CAGGCCAAGC AGCAGGGGCG CAACACCTGG
CGCCGCTACG CCGGCGAGTT GGGGACCAGG GCGCAGGGCG AGGACATCAG CCTGCGCCGC
GACCTGCAGG AGGCGATCGC CGGTGATCAG CTCATGCTGC ACTATCAGCC GGTGGTCGAT
GCGGCCACGG GGTATCTGCA CAGCGTGGAG GCATTGGTGC GCTGGCAACA TCCCGAACGC
GGGCTGATCC CGCCTGGGGT GTTCATCCCG CTGGCGGAGC AGACCGGTCA GATCATCGAT
ATCGGGCACT GGATCCTGCA CCGGGCCTGC CGTGACATGG CCGATCTGAA GGCGCGCACC
GGACGCACCC TTCCGGTGGC GGTGAATATC TCGCCGCTGC AGTTCCGGCG TCCGGGGTTT
CTGGATAACC TGGCGCAGGT GCTCAGCGAG AGCGGACTGC CCGCCGAGAC GCTGGAGCTG
GAGCTGACCG AGGGGGTGCT GATGGCCGAC ACCGAGGCCA CCATCGACAC CCTGGCGGCG
CTGCGCTCGC TGGGCGTCCA CGCCGCCATC GACGACTTCG GCACCGGCTT TTCCAGCCTG
AGCTACCTGC GTTACTTACC CATCGACAAG GTGAAGCTGG ATCGCAGCTT TATCCAGGAT
GTCACCAACA GCCGCAACAC CGCCGCCATC GTCCAGGGGG TTATCACCAT GGCCCACCAC
CTGGAGCTGG CGGTGGTGGC CGAGGGCATC GAGACCGAGG CCCAGCGCCG GGACCTGCAG
GATCGCGGCT GCGACCTGCT GCAGGGCTTT TTCTTCGCCC GCCCCATGCC GTTGACGGTG
CTTCGCCGGC GTCTGGCAGA GCCCTTCGGC GCCGCGACCG CCCGGTAA
|
|---|
| Protein sequence | MTGVSAQLET QQAIQDLIAR HAPLDEILAA ITRMIEEHLP GALCSIMLAD PEERTLNLSG
GHSFSERFCQ AMQGIPVGPG IGTCGSAAHE RRLVATADIM ADRSWNGFHD LARDEGVRAC
WSVPVIARSG ALLGTFATYY RQPGEPTAHD QAQIQRAAGL VALAVERQLD RRALQEAEQR
YRSLFTEHPD AVFQVDLEGR LRAANRSATR LIGLPESELL GRHYHAFVFS EDRRRSDAAF
EAVCRGKAQH YEVQARTANG SKVELEITNL PIIVDDRVVG IYGIARDVTL RKQYEARLAY
YASHDTITGL PNRREFESRL RHDFYLCRQH NDLLAVLYID LDDFKPVNDS LGHAFGDQLL
VAAARRLERL LGPSDTLSRF GGDEFVMLLP GLSGEAEALA VADRVLTLFK RSHSLGRHEV
HISASIGIAL NHRDVKSPEE MVQFANRAMQ QAKQQGRNTW RRYAGELGTR AQGEDISLRR
DLQEAIAGDQ LMLHYQPVVD AATGYLHSVE ALVRWQHPER GLIPPGVFIP LAEQTGQIID
IGHWILHRAC RDMADLKART GRTLPVAVNI SPLQFRRPGF LDNLAQVLSE SGLPAETLEL
ELTEGVLMAD TEATIDTLAA LRSLGVHAAI DDFGTGFSSL SYLRYLPIDK VKLDRSFIQD
VTNSRNTAAI VQGVITMAHH LELAVVAEGI ETEAQRRDLQ DRGCDLLQGF FFARPMPLTV
LRRRLAEPFG AATAR
|
|---|
| |