| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_1835 |
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| Symbol | truD |
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| ID | 4268190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008340 |
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| Strand | - |
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| Start bp | 2094075 |
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| End bp | 2095106 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 638126591 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_742669 |
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| Protein GI | 114320986 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.151087 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGCACTG AGCAAGCCGC GTCCCTGCCC CGCGCCTGGG GCCCCCCGCT GGGCACGGCG
CGCCTCAAGG CCACCCCGGA GGACTTCCTG GTCGAGGAGC AGACCGGGCT CTGCCCTTGC
GGCGACGGGG AGCACCTGTG GCTGTGGGTG GAAAAGCGGG GTCTGAACAC CGCGCAGGTG
GCCCGGGCGC TGGCCGAGGC CGCCGGCATC CACCCGCGGG CGGTCTCCTT TGCCGGCCTG
AAGGACAAAC ACGCCCTGAC CCGCCAGTGG TTCAGCCTGC AGTCGCCCGG TCGGTCGCTG
CCCCTGGGCG TGGGGGAGGG GCCGATCCCG GGCGTGCGCA TCCTGATCGC CCGGCGCCAC
CATCGAAAGC TGCGCACCGG GGCCCTCAAG GGCAACCGGT TCGTGCTGAC CCTGCGGGAC
TGCGACGCCG ATCCGGCGGC GGTGGCACAG CGCCTCTACC GCATCAGCAC CCAGGGCGTG
CCCAACTACT TCGGCCACCA GCGCTTCGGG CGTGGCGGCG GCAATCTGGC CCAGGCCTCG
GCCTGGTTCG CCGGCGGGCG TCCGCCCCGC GACCGCAAGC TGCGCGGCCT GCTGCTCTCC
AGCGTGCGGT CCGAGCTGTT CAATCGGGTG CTGGCGCGGC GGGTCGGGGA GGGCAGTTGG
AACCGACTGT TGCCGGGCGA GGTGGCCATG CTCGATGGGC GCGGAGCGGT GTTCGAGACC
GATCCGGCCG ACCCCGCTCT GCCCGGGCGG TGTGCCCGTC TGGAGATCCA CCCCACGGGG
CCACTGGCGG GCGAGCGCGG GGTGCAGCCC GGCGGCGAGG TCGCGGCCCT GGAGCGGTCG
GTATTGGCGG CCGAACCCCT CTGGCACCAG GGCCTGGCGC GGGCAAGGAT GGAGGCGGCG
CGCCGTGCGC TGCGCCTGCG GGTGGTCGAT CTCGCCTGGC ATTGGCCGGC GCCGGGCCGG
CTCCAACTTA GTTTCCGGCT GCCTGCCGGG GCCTATGCCA CCGTGGTGGT ACGGGAGGTG
TTGGAGTGTT GA
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| Protein sequence | MSTEQAASLP RAWGPPLGTA RLKATPEDFL VEEQTGLCPC GDGEHLWLWV EKRGLNTAQV
ARALAEAAGI HPRAVSFAGL KDKHALTRQW FSLQSPGRSL PLGVGEGPIP GVRILIARRH
HRKLRTGALK GNRFVLTLRD CDADPAAVAQ RLYRISTQGV PNYFGHQRFG RGGGNLAQAS
AWFAGGRPPR DRKLRGLLLS SVRSELFNRV LARRVGEGSW NRLLPGEVAM LDGRGAVFET
DPADPALPGR CARLEIHPTG PLAGERGVQP GGEVAALERS VLAAEPLWHQ GLARARMEAA
RRALRLRVVD LAWHWPAPGR LQLSFRLPAG AYATVVVREV LEC
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