| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_1800 |
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| Symbol | |
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| ID | 4268719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008340 |
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| Strand | + |
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| Start bp | 2056294 |
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| End bp | 2059794 |
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| Gene Length | 3501 bp |
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| Protein Length | 1166 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638126556 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_742634 |
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| Protein GI | 114320951 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGAGA AACACGCCTC ACCGCTGACA CCGCCCCTCC CCGCCAAGGC CGGCAACCGC
GAGCACTGGT ACGGCCTGCA CGGGGCTACC GGCGCGCTGG CCCTGGCCCA GGCGGCCCGG
GCCCATGACG GCCTGGTGGT GGCGGTCACC GACAGCCCCC AGCAGGCGGC GCGGCTGGAT
ACGGAGTTGC GCTTCTTCCT CGGCGATCAC GCCCGGGGCG AGACGCCGGT GTTCAGCTTC
CCGGACTGGG AGACCCTGCC CTACGACGTC TTCTCACCCC ACCAGGACAT CATCTCCGAG
CGGCTGGCCG CGCTCTACCG CCTGCCGCGC ACCCGGGGCG GCGTGCTGAT CGTGCCGGTG
AACACGCTGA TGCAGCGCCT GGCCCCGGTG AGCTGGCTGG AGGGCCAGGG CCTGATGCTG
GGGGTGGGCG ACCGGCTGGA CCTGGACGCC ATGCGCGAGC GGCTGGAGCA GGCCGGCTAC
CGCTGCGTCT CCGAGGTGGG CGAGCACGGC GAGTTCGCGG TGCGCGGCGC CCTGCTCGAC
CTTTTCCCCA TGGGGGCCAC ACAGCCGGTG CGCATCGACC TGTTCGACGA CGAGGTGGAG
ACCCTGCGCC ACTTCGACCC GGACACCCAG CGCACCACCG AGAAGATCGA CCGGGTGGAG
CTGCTGCCGG CGCGGGAGTT CCCCACCGAC GAGGCGGGCA TCACCCAGTT CCGCGGGGCG
TGGCGCGCCG CCTTCGAGGG TGACCCCTCG CGCAGCCTGG TCTACCGGGA GGTGAGCGCC
GGCCACCTGC CGGCGGGCAT CGAGTACTAC CTGCCGCTCT TTTTCGAGGA GACGGCCACC
CTGTTCGACT ACCTGCCCAA GGGCGCCCTG GTGGCCCGCC TGGGCGAGTC GGACACCCAG
GCCGACACCT ACTACACCCA GGTGCGCAAC CGCTACGAGC AGCGCCGCCA CGACCTGGAG
CGGCCGCTGC TGGCACCGGA ACGGCTGTTC CTGAGCCCCG ACGACCTGCG CGAGCGGTTC
AACACCCTGC CCCAGGTGGT GCTGCACGCC GACACCCCGG CGCCGGAGGC CCCGCGCCCC
CGCGAAGTGG TTTTCGAAAC CGAGCCGCTG CCCGACCTGC GCAACCGCCC CCAGGCGGAC
AACCCGCTGG AGCGACTCAC CAGTTACCTC TCCGACTACA CCGGCCGGGT GCTCTTCATT
GCCGAAACCA CCGGCCACCG CGAGGCGCTG CTGGAGCGGC TGCAGAAGCA CCGCATCCGC
CCCCAGGCGT GCGACTGGGA GGGGTTCGTC ACCGGTGACA TGCCCATGGG CGTGGCCGTG
GCCCCGGTGG AGCACGGCGC CCAGGTGAAT CAGCCCGCCA TGGCGCTGAT CACCGAGGAC
GCCATCTACG GCGACCGGGC CCAGCAGCGG CGCCGGCGCC GCGCCGGGGC GGTGCGCGAC
CCCGAGACCA TCATCCGCGA CCTGACCGAC CTGGCCATCG GTGCCCCGGT GGTGCACGAG
GACCACGGCG TGGGCCGCTA CCTGGGGCTG CAGACCCTGG AGGCCGGCGG GCTGACCACC
GAGTTCCTCA CCCTGGAGTA CGCCAAGGGC GACAAGCTCT ACGTGCCGGT GGCCTCGCTG
CATCTGATCT CCCGCTACAC CGGCGCCGAG GGCGACGCGG TGCCCGTGCA CCAGTTGGGC
AGCGACAAGT GGGAGAAGGC CAAGAAGCGC GCCGCCAAAC GCGCCCGGGA CGCCGCCGCC
GAGTTGCTGG ATATCTACGC CCGCCGCGCC GCCCGCGAGG GCCATGCCTA CGAGTGGCGG
GACGAGGACT ACCAGGCCTT CGCCGATGCC TTCCCCTTCG AGGAGACCCC GGACCAGGAG
AGCGCCATCG CCGCCGTGGA GGCGGACATG CGCTCGTCCC GCCCCATGGA CCGGGTGGTC
TGCGGCGACG TGGGCTTCGG CAAGACCGAG GTGGCCATGC GCGCCGCCTT CATGGGCATC
CAGGACGGCC GCCAGGTGGC GGTGATGGTG CCCACCACCC TGCTGGCCCA ACAGCACTTC
CAGAACTTCC GCGATCGCTT CTCGGACTGG CCGGTGCGCG TGGAGGTGCT CTCGCGCTTT
CGCAGCACCA AGGACACCAA CGCGGTGCTG CGCGACCTGG CCGACGGCAA GGTGGATATC
GTCATCGGCA CCCACAAGCT GCTGCAGGAC TCGGTCAAGT ACAAGGACCT GGGGCTGGTG
ATCATCGACG AGGAGCACCG CTTCGGCGTC CGCCAGAAGG AGAAGCTGAA GAAGCTGCGC
GCCGAGGTGG ACATCCTCAC CCTGACCGCG ACGCCCATCC CGCGCACGCT CAACATGTCC
CTGGCCGGTA TCCGCGACCT GTCCATCATC GCCACCCCGC CGGCCCGCCG CCTGGCGGTG
AAAACCTTCG TCAACCAGTG GGACCCGGCC ATCATCCAGG AGGCCTGCCA GCGCGAGCTC
AAGCGCGGCG GGCAGATCTA CTTCCTGCAC AACGACCTGG ACTCCATCGA CCGCATTGCC
CGGGAGCTGG AAGAGCTGGT GCCGGACGCC CGGGTGGACG TGGCCCACGG CCAGATGCCG
GAGCGCGACC TGGAGCGGGT GATGCTCGAC TTCTACCACC AGCGCTTCAA CATCCTGGTC
TGCTCCACCA TCATCGAGTC CGGCATCGAC GTGCCCACTG CCAACACCAT CCTGATCAAC
CGCGCCGACA AGCTGGGCCT TGCCCAACTG CACCAGCTGC GCGGCCGGGT GGGCCGCTCC
CACCACCGGG CCTACGCCTA CCTGATCGCG CCGCCGGAGA AGGCCATGAC GGCGGACGCC
AAGAAGCGCC TGGAGGCCAT CTCCAACCTG GAGGACCTGG GCGTGGGCTT CGCCCTGGCC
AGCCACGACC TGGAGATCCG CGGCGCCGGC GAGCTGCTGG GCGAGGAGCA GAGCGGGCAG
ATCAGCGAGG TGGGCTTCAA CCTCTACACC GAGCTGCTGG ACCGGGCGGT CAAGGCGCTG
CAGAGCGGCG AGGAGCCGGC GTTGGATGAG CCCATGCACC GTGGCGCCGA GGTGGATCTG
CGCATCCCGG CGCTGATGCC GGAGGACTAC CTGCCCGACG TGCACACCCG GCTAGTGATG
TACAAGCGCA TCGCCAACGC CCGCACGGAG GCGGAGCTGG ACGAGCTGCA GGTGGAGATG
ATCGACCGCT TCGGCCTGCT GCCGGACGCC ACCCGCAACC TGTTCCGCGT TACCGCCCTC
AAGCTGCGCG CCGACGCCCT GGGCATCGAG AAGGTGGAGG GGCTGGCCTC CGGCATTACC
CTGCACTTTG GCAGCAAGCC GAAGATCGAC CCGGAGGCGC TGATCTCGCT GATCCAGTCC
AGCCCGGAGA CCTACCGGCT GCAGGGTCAG GAGAAGCTGC AGTACCGCAA GCACCTGCCG
GAGGCGGAGG ACCGGATCCG CGCCGTGGAC GAGCTGCTGC GGGCGCTGCG ACCTTCCGCT
CGGGAGACCG CCGGCGCCTG A
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| Protein sequence | MPEKHASPLT PPLPAKAGNR EHWYGLHGAT GALALAQAAR AHDGLVVAVT DSPQQAARLD
TELRFFLGDH ARGETPVFSF PDWETLPYDV FSPHQDIISE RLAALYRLPR TRGGVLIVPV
NTLMQRLAPV SWLEGQGLML GVGDRLDLDA MRERLEQAGY RCVSEVGEHG EFAVRGALLD
LFPMGATQPV RIDLFDDEVE TLRHFDPDTQ RTTEKIDRVE LLPAREFPTD EAGITQFRGA
WRAAFEGDPS RSLVYREVSA GHLPAGIEYY LPLFFEETAT LFDYLPKGAL VARLGESDTQ
ADTYYTQVRN RYEQRRHDLE RPLLAPERLF LSPDDLRERF NTLPQVVLHA DTPAPEAPRP
REVVFETEPL PDLRNRPQAD NPLERLTSYL SDYTGRVLFI AETTGHREAL LERLQKHRIR
PQACDWEGFV TGDMPMGVAV APVEHGAQVN QPAMALITED AIYGDRAQQR RRRRAGAVRD
PETIIRDLTD LAIGAPVVHE DHGVGRYLGL QTLEAGGLTT EFLTLEYAKG DKLYVPVASL
HLISRYTGAE GDAVPVHQLG SDKWEKAKKR AAKRARDAAA ELLDIYARRA AREGHAYEWR
DEDYQAFADA FPFEETPDQE SAIAAVEADM RSSRPMDRVV CGDVGFGKTE VAMRAAFMGI
QDGRQVAVMV PTTLLAQQHF QNFRDRFSDW PVRVEVLSRF RSTKDTNAVL RDLADGKVDI
VIGTHKLLQD SVKYKDLGLV IIDEEHRFGV RQKEKLKKLR AEVDILTLTA TPIPRTLNMS
LAGIRDLSII ATPPARRLAV KTFVNQWDPA IIQEACQREL KRGGQIYFLH NDLDSIDRIA
RELEELVPDA RVDVAHGQMP ERDLERVMLD FYHQRFNILV CSTIIESGID VPTANTILIN
RADKLGLAQL HQLRGRVGRS HHRAYAYLIA PPEKAMTADA KKRLEAISNL EDLGVGFALA
SHDLEIRGAG ELLGEEQSGQ ISEVGFNLYT ELLDRAVKAL QSGEEPALDE PMHRGAEVDL
RIPALMPEDY LPDVHTRLVM YKRIANARTE AELDELQVEM IDRFGLLPDA TRNLFRVTAL
KLRADALGIE KVEGLASGIT LHFGSKPKID PEALISLIQS SPETYRLQGQ EKLQYRKHLP
EAEDRIRAVD ELLRALRPSA RETAGA
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