| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_1661 |
|---|
| Symbol | |
|---|
| ID | 4270262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | + |
|---|
| Start bp | 1900257 |
|---|
| End bp | 1902203 |
|---|
| Gene Length | 1947 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638126419 |
|---|
| Product | putative glutamate synthase (NADPH) small subunit |
|---|
| Protein accession | YP_742497 |
|---|
| Protein GI | 114320814 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.950377 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCA CCACCAACGA GATGCAGTCG CTGACCCTGC GCCGATTCAA GGAGGGCGAC
CATCAGCCCA AGGACTGGCA GGAGCAGATC TTCCAGGCCG GCTGGTCGCA CAAGTGCCCC
ACCTATGTGC ACCGGACACC GCCGTGCCAG GGCAGTTGCC CGGCGGGCGA GGATATCCGG
GGCTGGTTGC AGATTGCCCG CGGACTGGAC AAGCCGACGG CGGACGAACC CTGGCAGGCC
TATGCCTTCC GTCGCCTCAC CGAGGCGAAC CCCTTTCCTG CGGTAATGGG CCGGGTCTGC
CCCGCCCCCT GCGAACAGGG GTGCAACCGT AACGCGGTGG AGGATCACGT TGGCATCAAC
GCCGTGGAAC ATAAGATTGG CGACTGGGCG CGGGAAAATG ATCTGAAATT CGATGCCCCG
GGCGAGCCCA CCGGCCGCCA CGTGGCGATC ATCGGCAGCG GCCCGGCCGG TATGGCCGCG
GCTTACCAAC TGCGCAAACG GGGCCATGCC TGCACCCTGT TCGAGGCCCA GGAGGAACTG
GGCGGCATGA TGCGCTACGG CATCCCGGGC TACCGCGTCC CGCGGCAGGT TCTCGATGCC
GAGATCCAGC GCATCCTCGA CCTGGGCGTG GAGGTCCGCA CCGGGGTCTG GGTCGGCCGG
GACATCACCA TCGAACAGCT CGACAACGAC TACGACGCCG TTCTCTGGGC GGTCGGCACC
CACAAAGGGC GCGACCTGCC GGTGGAGGGC TTCGAGGCGG CGCCCAACTG CCTCACCGGT
GTGGACTTCC TGCGGGCCTT CAACGAGGGC CGGCTGCACG CGGTGAGCGA CCGGGTCATC
GTGATCGGCG GCGGTGACAC CTCCATCGAC GTGGCCTCGG TCGCCCGCCG GCTTGGCTAC
AGCTCGGAGC TCGGCGACAA CCAGGGCGTG GAGCACGTGG TGATGGGCTA TACCGCCCAC
GATGCCGCCA GCCTGGCGGT GCGGGAAGGG GCCAAGGTCA CCCTCACCTC CCTGTTCCCG
CGCGAGGAGA TGACTGCCAC CGACCAAGAG GTGGAGGACG CCCTGCGCGA GGGGGTGGAC
ATCAAGGCCG GCGTCATGCC GGTGGCCGTA ATCACCGATG ACGAGGGCAG GGCCACCGCC
GTGCGCTTCG CCGAATGCCG GATGGAGAAA AACCGCCCCG TCCCCCTGGA AGGCACGGAG
TTCGAGGTCG AGACCGACCT GGTGATCTCG GCCATCGGCC AGATGGGCAA CCTGGAGGGG
CTGGAGGCGC TGGACAACGG CAACGGCTTC ATGGACTGCG ACCCCCACTT CCAGGTCAAG
GGTCGACCGG GGCACTTCGT GGCCGGGGAC ATCATCCGCC CGCACCTGCT GACCACCGCC
ATCGGCCAGG CCCGCAGCGC GGTCGCCAGC ATGGATCACT ACTTCCAGAC CGGCGAACCC
GCCAAGTTCC CCAAGATCAA CGTCCTGCAC TTCAACCTGC TGCAGGCGAT GCGCAAGGCG
GGCCAGGAGC CGACGCCCTA CGAGCCGCAG CCGGTGCGCG GCACCGCCGA CTCGGCTTTC
GCCGTCCACA ACTACGAGGA CCGCTCCAAG GTCGAGATCA TCAAACACGA CCAGCTCTTC
CTCGGCCATT TCAAGCCGAC ACCACGCCAC CAGCGCCAGC ATCGCGAGAT CAGTGAAGAC
TCGGTGATCG GTGATTTCGA TGAGCGGCTC CATCCGTTGT CCGATGAGGA GGCCGTCGCT
GAGGCCGAGC GCTGCATGAG TTGCGGCCTC TGCTTCGAGT GCGACAACTG CCTGATCTAC
TGCCCCCAGG ACGCGGTCGA GCGGGTGCCG AAAAAGGAAC GCGCGACCGG TCGCTACGTG
CAGACCGATT ACACCCGCTG CATCGGCTGT CATATCTGCC GCGATGTCTG CCCCACCGGT
TACATCGAGA TGGGGCTGGG GGAATAA
|
|---|
| Protein sequence | MSTTTNEMQS LTLRRFKEGD HQPKDWQEQI FQAGWSHKCP TYVHRTPPCQ GSCPAGEDIR
GWLQIARGLD KPTADEPWQA YAFRRLTEAN PFPAVMGRVC PAPCEQGCNR NAVEDHVGIN
AVEHKIGDWA RENDLKFDAP GEPTGRHVAI IGSGPAGMAA AYQLRKRGHA CTLFEAQEEL
GGMMRYGIPG YRVPRQVLDA EIQRILDLGV EVRTGVWVGR DITIEQLDND YDAVLWAVGT
HKGRDLPVEG FEAAPNCLTG VDFLRAFNEG RLHAVSDRVI VIGGGDTSID VASVARRLGY
SSELGDNQGV EHVVMGYTAH DAASLAVREG AKVTLTSLFP REEMTATDQE VEDALREGVD
IKAGVMPVAV ITDDEGRATA VRFAECRMEK NRPVPLEGTE FEVETDLVIS AIGQMGNLEG
LEALDNGNGF MDCDPHFQVK GRPGHFVAGD IIRPHLLTTA IGQARSAVAS MDHYFQTGEP
AKFPKINVLH FNLLQAMRKA GQEPTPYEPQ PVRGTADSAF AVHNYEDRSK VEIIKHDQLF
LGHFKPTPRH QRQHREISED SVIGDFDERL HPLSDEEAVA EAERCMSCGL CFECDNCLIY
CPQDAVERVP KKERATGRYV QTDYTRCIGC HICRDVCPTG YIEMGLGE
|
|---|
| |