| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_1560 |
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| Symbol | |
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| ID | 4269934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008340 |
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| Strand | - |
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| Start bp | 1782610 |
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| End bp | 1785663 |
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| Gene Length | 3054 bp |
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| Protein Length | 1017 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638126317 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_742397 |
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| Protein GI | 114320714 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGAGT CACTGCGGGT TGTCATCGCC GAGCCGGACC CCGCGATACA GGAGCGCATC
ACCCGGGCCC TGCAAGGCCC GGGGCATACG GTGGTGGGCC GGGCCAGCCA CCCGCTGGAA
CTGATCGCCG AGGTGGAACG GTCTGCGCCG GACGTGGTGC TGGCCCGCGA CACCTGGCCC
GCCGAGGGTG ACGAGCACCG GGGGCCTCTG CCCTGTGCAC CCCACGTGCC GGTGGTGGTC
TGGGTGCCAG AGCCGGACGC CCGGCCCCCG GATCGGGATT ATCCGCCCGA GGGGGCAGCG
GCCGTGCTCG CGGGCGCGCT GGAGGAGGAT GCCCTGGCGG CGGCATTGGC AACGGCGGTG
GCCCGCGGGC GGGAGCAGCA CCGCTGGCGA CGGCATGCGC TGGCCCTGAC CCGGGAGAAC
ACTTTGCTTC GGGTGTTGGC ACGCTGCAAC CAGGCGGTGA TCCGTGCCCG CTCGGAGCAG
ACGCTGCTGC AGGAGGCCAC CCACCTGCTT GCCCGCGACG CCGGCTATGA ACTGGTCTGC
GTCCTGGGTG CGGGACGAGC GGGCGGACCG GTGGAACGGT TGGCGGCGGC AGGCGAAGAA
CAGGGCTACC TGGACTGCCT GACCGGCGAC CAGGGGTTCA ACGTCCGTAG TCACGGGCCG
GCGGGCGCCG CCCTGCGCAG CGGACAGACC ACGGTGCTGC GCGAGCTGGC GCAACGGCGC
TCGCCCCGTC CCTGGCGGAT CGAGGCGGTG CGGTGCGGGT TTTCGGCTAT CTGCGCCCTG
CCGCTGGTGG CCGGTCGCGG CGGCGAGGGG CCTGTCTTCG GGGTACTGGT CATCCACAGC
CGGGACCCGA GTGCGCTGGA TGCGGCCGCC GTGCGGGTGC TGGACAACCT GGCGGCCAAC
CTCTCCCACG GCGTTTGGGC GCAGCGGTTG CGGGGACGTC AGCGGCGCAT GCGATCAGAG
CTGCGCAAGC ACGCGCGGGC CACCGAGAAC AGCCCGGTCT CGGTGCTCAT CACCGACGCC
GAGGCCCGCA TCGAGTACGT CAACCCCTCG TTCACCCGCC TGACCGGTTA CGCCCCGGAA
GAGGTGATTG GGCGTGACCC GCGCATGCTG GGCTCCGGCC ACACGCCGCC AGAGGTCTAC
CGCGAGCTCT GGGAGACGGT CCGGGCGGGT CGCACCTGGC AGGGCACGGT GCAGAACCGG
CGCAAGGACG GGCAGTTGAT CTGGGAGCGC CAGGTCATCT CGCCGCTCAG GGCCGCCGAC
GGCACTATCA CCCACTTCGT GGCCGTGCGC GAGGACATCA CCGAGAGCAA GCGGGCCGAG
TCGGCGATCC GGCTGCGCGA GCGGGCGCTG GAGTCCACCG CCAACGGCAT CCTCATCTCC
GATCTGCGCC TGCGGGACAA CCCGATCGTC TACGTCAATC CCGCCTTCGA GCGCATCACC
GGTTACCCCC GGGACGAGGT GGTCGGGCGT AACGGCCGTT TCCTGGTCCG GGACGACAAG
GACCAGCCGG GGCTTGAGGA GATCCGCAGT GCCCTGCGCT CGCGCCGGGA GGCCCACGCG
GTGATCCGCA ATTACCGCAA AGACGGCACG CTCTTCTGGA ATGAGCTGTT CGTGGCGCCG
GTGCGCGAGG ATGATGGCGC AGTGCACTAC ATGGTGAGCG TGATCAACGA CGTCACCGAG
CGCAAACGCT ACCAGGCCGA GCTGGAGCAG CGCACCCACT ACGATGCCCT CACCGGCCTG
CCCAACCGCA ACCTGCTGGT GGATCGCCTG CACCAGGCCC TGCTGTACGC CCGCCGTTCC
GGGCGCCACG TGGCCCTGTT GAACGTCGAC CTGGACCGCT TCCAGATTAT CAATGAGAGC
CTGGGGCACG CGGCCGGGGA TCAGCTGCTG CGCACCGTGG CCGATCGGCT GACCGCCGCC
CTTCGGGGTT TCGACACCGT GGCGCGCATG GGCGGTGATG AGTTCAACAT CGTGCTCACG
GAGCTGCGCA ATACGCGGGA CGCGGAACTG CTGGCCGGCG AGCTGCAGGA GGCGCTGGCA
CCGTCCATCT CGGTGACCGG ACAGGACGTC TTCCTGTCGG TGTCCGTGGG CTACACGGTT
TTCCCCGATG ATGGCGATGG CCCGGAAGAC CTCATTCGTC GCGCCAGTGT GGCGATGCAC
GAGGCCAAGC GCCAGGGTGG CGGGGTGATC ATCCGCTACT CCGAGCGGTC CGAGCCGCGC
CAGATCAACC GCCTGACTCT GGAATCGGAC CTGCAGCGGG CCATTGAGCG CGGCGAGCTG
CGGCTCCACC TCCAGCCTCA GGTGGACCTG GACACCGGCG CGATGAGCGG CGCCGAGGCG
CTGCTGCGCT GGGAGCACCC CCGCCACGGC CTGGTCTCGC CCATGCAGTT CATCCCCCTG
GCGGAGGAGG TGGGGCTGAT CATCCCCATG GGGCGCTGGG TACTGGAGAC GGTGGCCACC
CAACTGGCGC ACTGGCAGCA GCAGGGCCTG CCGGTGGTGC CGGTGGCGCT GAATATTTCG
GCCCGCCAGT TCCTCCATGC GGAGCTGGTG GAGGATGTCC GCCAGATCCT GGAGGGCCAC
GGTGTCGCCC CGTCGCTGTT GGAGCTGGAG CTGACCGAGA GTCTGATGGC GCGCAATCCG
GAGGTGGCGG TGCAGATCCT GCGGGAGTTG AAGGCGATGG GGCTTCGGCT TGCCCTGGAC
GATTTCGGTA CCGGCTACTC CAGCCTGGCG CACCTGAAGC GCTTCCCCAT CGACACCCTG
AAGATCGATC AGTCGTTCGT CCGGCACGTG AACGAGGACG GGGACGACGC TGCCATTATC
AACGCCACCA TCCGCATGGC CCATTCGCTG GGGCTGAACG TGGTGGCCGA GGGGGTGGAG
CGCGAGGACC AGCTTGAGCA TCTCAAGCGC CAGCGGTGTG ATTACGCCCA GGGCTACTTC
TTCAGTCGGC CGTTGTCGCT GGAGCGGTTC GCAGCCCGGC TGGCCGGCGA CGAAAGCGGC
CCTGATCCGG CCCCCGCGGA GGCGGGGGCG CCGGGCGCCC GGACTATGCC ATAA
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| Protein sequence | MPESLRVVIA EPDPAIQERI TRALQGPGHT VVGRASHPLE LIAEVERSAP DVVLARDTWP
AEGDEHRGPL PCAPHVPVVV WVPEPDARPP DRDYPPEGAA AVLAGALEED ALAAALATAV
ARGREQHRWR RHALALTREN TLLRVLARCN QAVIRARSEQ TLLQEATHLL ARDAGYELVC
VLGAGRAGGP VERLAAAGEE QGYLDCLTGD QGFNVRSHGP AGAALRSGQT TVLRELAQRR
SPRPWRIEAV RCGFSAICAL PLVAGRGGEG PVFGVLVIHS RDPSALDAAA VRVLDNLAAN
LSHGVWAQRL RGRQRRMRSE LRKHARATEN SPVSVLITDA EARIEYVNPS FTRLTGYAPE
EVIGRDPRML GSGHTPPEVY RELWETVRAG RTWQGTVQNR RKDGQLIWER QVISPLRAAD
GTITHFVAVR EDITESKRAE SAIRLRERAL ESTANGILIS DLRLRDNPIV YVNPAFERIT
GYPRDEVVGR NGRFLVRDDK DQPGLEEIRS ALRSRREAHA VIRNYRKDGT LFWNELFVAP
VREDDGAVHY MVSVINDVTE RKRYQAELEQ RTHYDALTGL PNRNLLVDRL HQALLYARRS
GRHVALLNVD LDRFQIINES LGHAAGDQLL RTVADRLTAA LRGFDTVARM GGDEFNIVLT
ELRNTRDAEL LAGELQEALA PSISVTGQDV FLSVSVGYTV FPDDGDGPED LIRRASVAMH
EAKRQGGGVI IRYSERSEPR QINRLTLESD LQRAIERGEL RLHLQPQVDL DTGAMSGAEA
LLRWEHPRHG LVSPMQFIPL AEEVGLIIPM GRWVLETVAT QLAHWQQQGL PVVPVALNIS
ARQFLHAELV EDVRQILEGH GVAPSLLELE LTESLMARNP EVAVQILREL KAMGLRLALD
DFGTGYSSLA HLKRFPIDTL KIDQSFVRHV NEDGDDAAII NATIRMAHSL GLNVVAEGVE
REDQLEHLKR QRCDYAQGYF FSRPLSLERF AARLAGDESG PDPAPAEAGA PGARTMP
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