| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_1497 |
|---|
| Symbol | |
|---|
| ID | 4269854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | + |
|---|
| Start bp | 1709115 |
|---|
| End bp | 1711184 |
|---|
| Gene Length | 2070 bp |
|---|
| Protein Length | 689 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638126255 |
|---|
| Product | putative GAF sensor protein |
|---|
| Protein accession | YP_742336 |
|---|
| Protein GI | 114320653 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCCTA CCGACCCCTC TGAACTGGCC CGGGCACAGG AGGCCTGCGC CCGCGAGCCG
GTGCATATCC CCGGGGCGGT GCAACCCTCC GGGTGTCTGG TCAGCCTTGA CCAGCGGTTG
CGACGTCTTC TGCAGGCCAG CGCCAACCTG CACCGGTTTT TCGGTGTAAC TCCCGAGCAG
GCGCTGGCTT CCGACCCCAA GGCCCTCCTG GGGCGGCATC TGCTTCGCCG GATCAGCGCC
TCGCTGCCGC AGGCTCCGCT CCAGCCAGTG AGCCTGGTAG CGGGTATGCG CCTGCGGGGG
AGGAACCGGC GCTTTCGAAC CACGGCCTAT CGAAGCGGGG AGCGGGTGGT GCTCGAATTC
GAGGCGCTTT CCGGTCCCGA TACCCAAACG CTGTTCCCCG CGATGGGGGA CTGGTTGTCG
CACCTGGCCG GAGCCCGCAC GGCGGGGGCG CTCCTGGAGA CCCTCGTCGC GGCGGCGCGG
GATCTCACCG GACACGAGCG GGCGATGGTC TACCAGTTCG ATCCCGACTG GCATGGCTGC
GTGGTGGCCG AGAGCCGGTG CGAGCATATG GACAGCTATC TATCGCACCA CTTCCCGGCC
AGCGATATCC CGCCACAGGT ACGGCAGCTC TACGACGTTA ATCCGGTTCG TAGCATCCCC
GATGCCCCGG CCGCTCCGGT GCCATTAGTA CCGACAGAGG ACCCACTGGA CCAGCACCCG
CTGGACCTTT CCGCCGGTGT GTTGCGGGCC GTCTCGCCGA TCCACCAGGC CTATCTACAC
AACATGGGCG TGAAGTCGGC CCTGTCCGTG GCCATTCGGG ACGATGCCGA GGGTCTTTGG
GGGCTGCTTG CGTGTCATGG ACAGGAGGCG CGCTCCCTGC CTCCCACCCT GCGCGATGCG
GTCCTGGCCT TAGTGCAAGT GGCTCAATCC CGTTTGATGC TGCTCAATGC CCAGCGCAAT
GCCCGCTATC AGCGGAGAGT AAGGGCTTGT CGCGCCCGCC TCGTGCTGGA ACGCCGGCCA
CGGGCAACCC GGTTGTCGGA ACTGGTGGCG GATCATGGGG CGGATTGGCT GACGCTTTTC
CGGGCGTGTG GTATCGCCCT GGCCTATCGC GGTCAGTATC ACACCTTCGG CACGGCACCA
CCCGACCGGA CGCTGGCAGC CTTGGTGCAG GGCCTGGTCA GGTTGGCGCC CAGGGATGCA
TCCTGGAGCT GGCACTCTCC GGACGACTGG CCGGTGGCGG CCGAACTCCC GCGCGGGCGC
TGCTGCGGTC TGTTGGCCGC ACCGGTGCTG GTGGATTCGG AGCAGCCGGC GTTTCTGCTC
TTCTTTCGGG CCGAGAACGT TCAAACCCGG CTTTGGGCAG GCCGGCCTGA GGCCCTCTGG
GGCGCCGAGA AGGTCGCCGC CCCCCTCACC CCCCGCCATT CCTTCGCGGC CTGGCGCGAG
GAGGTCCGCG GCCACAGCGC GCCATGGCGT GATATCGAGC GAGAGGCGGT CCTGGACCTG
GCCGACGAAG TGGCCGTGCT GCTCTCCAGA AAGGAGATCG ACCTGCTCAA TGCCCAGTTG
ACCGAGGCCA ACCGGCGGCT GAAGCGCCAG GCCACCACCG ATTCACTCAC CGGCGTCTGG
AACCGCTACC GCATGCAGGA GCAGATCGAG CTGGAGCGCG GCGCCCACGA GCGGTATGGC
ACCCCCTGTT CGTTGCTGCT CTTCGACATC GATCATTTCA AGGCCGTCAA CGACCAGTAT
GGGCACGAGG CCGGCGACCA AGTCCTGGTC GCCCTGGCCC GCGCGGTGGT GGGGGAACTC
CGGGCCACCG ATTTTCTCGG TCGCTGGGGC GGTGAGGAGT TCATCGTGCT GGCCACGAAC
AGTGCCCCGG AGGAGGCATG GACCCTGGCC GAGCGGCTGC GACAGTGCAT CGCCGGGCTG
CGGTTTCCCG GCGTGGGACC GGTCACCATC AGTGTGGGGG TGGCATCGCT GAGCCGCGGG
GATACGGTGG ATCGCCTGAT CGACCGCGCA GACCGGGCGA TGTACCGGGC TAAGCAGCGC
GGCCGTAATC GGGTGGAGCA GGCCGAATGA
|
|---|
| Protein sequence | MAPTDPSELA RAQEACAREP VHIPGAVQPS GCLVSLDQRL RRLLQASANL HRFFGVTPEQ
ALASDPKALL GRHLLRRISA SLPQAPLQPV SLVAGMRLRG RNRRFRTTAY RSGERVVLEF
EALSGPDTQT LFPAMGDWLS HLAGARTAGA LLETLVAAAR DLTGHERAMV YQFDPDWHGC
VVAESRCEHM DSYLSHHFPA SDIPPQVRQL YDVNPVRSIP DAPAAPVPLV PTEDPLDQHP
LDLSAGVLRA VSPIHQAYLH NMGVKSALSV AIRDDAEGLW GLLACHGQEA RSLPPTLRDA
VLALVQVAQS RLMLLNAQRN ARYQRRVRAC RARLVLERRP RATRLSELVA DHGADWLTLF
RACGIALAYR GQYHTFGTAP PDRTLAALVQ GLVRLAPRDA SWSWHSPDDW PVAAELPRGR
CCGLLAAPVL VDSEQPAFLL FFRAENVQTR LWAGRPEALW GAEKVAAPLT PRHSFAAWRE
EVRGHSAPWR DIEREAVLDL ADEVAVLLSR KEIDLLNAQL TEANRRLKRQ ATTDSLTGVW
NRYRMQEQIE LERGAHERYG TPCSLLLFDI DHFKAVNDQY GHEAGDQVLV ALARAVVGEL
RATDFLGRWG GEEFIVLATN SAPEEAWTLA ERLRQCIAGL RFPGVGPVTI SVGVASLSRG
DTVDRLIDRA DRAMYRAKQR GRNRVEQAE
|
|---|
| |