| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_1408 |
|---|
| Symbol | |
|---|
| ID | 4270630 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | - |
|---|
| Start bp | 1612009 |
|---|
| End bp | 1615185 |
|---|
| Gene Length | 3177 bp |
|---|
| Protein Length | 1058 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638126164 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_742247 |
|---|
| Protein GI | 114320564 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.902436 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.728656 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCGGT TCTTCATCGA CCGGCCGATC TTCGCCTCAG TCATCTCGAT CATCATCCTG
GTGGCCGGGC TCGCGTCGCT GCGCGCCCTG CCCATCGAGC AGTACCCGGA CGTGGTGCCA
CCGGAGATCG TGGTCCAGGC CGCTTACCCC GGCGCCAGCT CGGAGGTGTT GGCGGAGGCG
GTGGCCGCAC CCCTGGAGCA GGAGATCAAC GGCGTGGACG ACATGATCTA CATGGAGTCC
ACCAGTACCG ACGCCGGCAC GGTCCAGATC TCGGTCTCCT TCGAGATGGG CACCGATCCG
GATCAGGCCG AGATCAACGT CAACAACCGG GTGCAGGCCG CCCTGCCCCG ACTGCCCCAG
GCGGTACGGG ACCAGGGGGT GCGGGTGGAG GCCCGCTCCA CCAACATCCT GTTGGTGGCG
ACGCTCAGCT CGCCGGACGG GCGCCACGGC ACGCTCGAGC TCAGTAACTA CGCCCTGCTG
AACATCATCG ACGAACTGGA GCGCCTGCCC GGTGTGGGCG AGGCCTCTCT ATTCGGCCAG
CAGGACTACG CCATGCGGAT CTGGCTACGG CCGGACAAGC TGGCCCAGTA CGACCTGACG
CCGGCGGAGG TGGCGGCGGC CATCCGCGAG CAGAACGCCC AGTTCGCCGC CGGCCAGATG
GGCGCTGAGC CGGCCCCCGA CGGCCAGGCC TTCACCCTCA CCGTGACCAC CCGGGGCCAA
CTGGAGGGGG CGGAGGAGTT CGAGGCCATC ATCCTGCGCT CGGACGAGTC CGGGGCCACC
CTGCGCCTCG GCGACGTGGC CAGGGCCGAA CTGGGTGCCC AGAGCTACGC CTTCTCCGCC
ACCTACAACG GCGAGCCGAC CGTCCCCATC GGGGTCTATC AGGCGCCCGG GGCCAACGCC
CTGGAGACCG CCGAGCAGGT GCGGGCCGCG CTGGCGGACA GCGCCGAGCG CTTTCCCGAG
GGCGTGGAGT ACACCATCCC CTATGACACC ACCGAGTTCG TGGAGGTCTC CATCCGGGAG
GTCTACACCA CACTGCTCAT CGCGGTAGGG CTCGTGGTGC TGGTGACCTT CGTCTTCCTG
CAGCACCTGC GGGCGACCCT GATCCCCATC ACTGCGATAC CGGTCTCCCT GATCGGGACC
TTTGCGGGCA TGCAGGCCAT GGGCTTTTCG GTCAACCTGC TGACCCTCTT CGGGCTGGTG
CTGGCCATCG GCATCGTCGT GGACAACGCC ATCATCGTGA TGGAGAACGT CGAGCGGCTG
ATGCGCGAGA AGGGGCTGAA GGCCAGGGAG GCCTCGGTGG AGACCATGAA GCAGGTTTCC
GGGGCGGTGG TCTCCTCCAC CCTGGTGCTG GTGGCGGTCT TCGCGCCCGT GGCCTTCCTG
GGCGGTCTGA CCGGTGAGTT GTACCGCCAG TTCGCGGTCA CTATCGCCTT CTCGGTGGTG
ATCTCCGGCG TGGTGGCGCT GACCCTGACC CCGGCGATGT GTGCCCTGCT CCTGGATAAG
CAGCCGAAGA CACCCTGGCT GCCCTTCCGC CTCTTCAACG CCGGCTTTGA ACACCTGACC
CGGGCCTTCG TGGCCGCGGT CGGCTTCCTG GTCAGAAACC GCACTGTGGG TGTCGGGCTG
TTCGCACTCG CCGTGGGCGG CGCGGTGTTC CTGGTGGAGC GCATGCCGGA CGGCCTGGTG
CCCCAGGAGG ACCAGGGGTT TGCCCTGGTG GTCGCACAGT TGCCGCCCAC CTCAGCGCTG
AACCGCACCG AAGCGGTCCG CGACGCCCTG GCGGCGCAGC TCACGCAACT GGAAGAGATC
CAGGAGTTCA CCGCCTTCGC CGGCTTCGAC ATCATCGCCG GCTCGCTGCG GACCAACGCC
GCGGTCGGTT TCGTGAACTT CACCGACTGG GCCGATCGGC CCCGGCCCGA CCAACACGCC
GCGGCCATGA GTGAGCGAAT CTCCGGGATG GGGTTCGGCC TGCAGGAGGC CAATGTGTTC
GCCTTCATTC CGCCGCCCAT CCAGGGGCTG TCACTGACCG GCGGCGTGGA GGGCTTTCTG
CAGGTGCGCG AGGACATGAG CGCCCGCCAG GTGGAGGCCT TGGCCAACCG GGTGGTCCAG
CGGGCCAATG AGCGCCCGGA GCTGGTGAAC GCCCGCTCGA CGCTGGACAC CGGCATCCCC
CGCTACCGTG CGGAGTTGGA CCGCGAGAAG GCCAAGGCGG CCGGGGTGCG GATTGACGAG
GTGTTTAATA CCATGCGGGC CACCTTCGGC GCCCTCTATG TCAACGATTT CACCTTCGCC
GGACGGCTAT GGCAGGTGAA CCTCCAGTCC GAGCAGGACT TCCGGAGCCA TCCGGAGGAC
CTGCGCCATG TCTTCGTGCG CTCCGAGAGC GGTGATCTCG TGCCGCTGAG CGCGCTGGTC
CGTCTGACCC GCGAGTCGGG CGCGGACATC ATCAACCGCT TCAACATCTA TCAGGCCGCC
AAGCTGATGG CCGACCCCGC CCCCGGCTAC ACCAGCGGTG ACGCGAAGGC GGCGCTCGAG
GCGGTGGTGG CCGAGGTCCG CGACGAGGAG GGGGCCGACG CTCTGCTCGG CTGGATCGGC
GAGGCCTACC AGTTGGAGGT GGCGGCCGGC GCCGGCGCCG CGGCCTTCGC CATGGGCCTG
CTAATGGTGT TCCTGATCCT GGCCGCGCAG TACGAACGCT GGACGCTGCC TCTGGCCGTG
GCCACCGCGG TCCCCTTCGC CGTCCTGGGC GCCGCCCTCT TCGCCCTGCT CCGCGGTTTC
CCCAACGACA TCTACTTCCA GGTGGGCCTG CTGGTGCTGA TCGGCCTGGC GGCCAAGAAC
GCCATTCTCA TCGTGGAGTT CGCGGCCCAG AACCGGGCCA CCGGCATGAC CTCCACCGAG
GCGGCCATGG CTGCGGCACG CCAGCGTTTC CGCGCCATTA TGATGACCGC CCTGACCTTC
ATCATCGGCA CCCTGCCTCT GGTGTTCGCC ACCGGGGCCG GCGCCGCCAG CCGCCAGGAG
ATCGGGACCG TGGTGGTGGG CGGCATGCTG GCCGCCAGCA CCCTGGCGCT GCTCTTCGTG
CCGCTGTTCT ACAAACTGCT TGAGGATGTC GCCACCTGGC GCAACGAGCG GCGGGCCCGG
CGTGAGCAGG AGAAGGCGGC GCAGGCCGAT GACAAGGAGG CCGGGAACCA TGCGTAA
|
|---|
| Protein sequence | MLRFFIDRPI FASVISIIIL VAGLASLRAL PIEQYPDVVP PEIVVQAAYP GASSEVLAEA
VAAPLEQEIN GVDDMIYMES TSTDAGTVQI SVSFEMGTDP DQAEINVNNR VQAALPRLPQ
AVRDQGVRVE ARSTNILLVA TLSSPDGRHG TLELSNYALL NIIDELERLP GVGEASLFGQ
QDYAMRIWLR PDKLAQYDLT PAEVAAAIRE QNAQFAAGQM GAEPAPDGQA FTLTVTTRGQ
LEGAEEFEAI ILRSDESGAT LRLGDVARAE LGAQSYAFSA TYNGEPTVPI GVYQAPGANA
LETAEQVRAA LADSAERFPE GVEYTIPYDT TEFVEVSIRE VYTTLLIAVG LVVLVTFVFL
QHLRATLIPI TAIPVSLIGT FAGMQAMGFS VNLLTLFGLV LAIGIVVDNA IIVMENVERL
MREKGLKARE ASVETMKQVS GAVVSSTLVL VAVFAPVAFL GGLTGELYRQ FAVTIAFSVV
ISGVVALTLT PAMCALLLDK QPKTPWLPFR LFNAGFEHLT RAFVAAVGFL VRNRTVGVGL
FALAVGGAVF LVERMPDGLV PQEDQGFALV VAQLPPTSAL NRTEAVRDAL AAQLTQLEEI
QEFTAFAGFD IIAGSLRTNA AVGFVNFTDW ADRPRPDQHA AAMSERISGM GFGLQEANVF
AFIPPPIQGL SLTGGVEGFL QVREDMSARQ VEALANRVVQ RANERPELVN ARSTLDTGIP
RYRAELDREK AKAAGVRIDE VFNTMRATFG ALYVNDFTFA GRLWQVNLQS EQDFRSHPED
LRHVFVRSES GDLVPLSALV RLTRESGADI INRFNIYQAA KLMADPAPGY TSGDAKAALE
AVVAEVRDEE GADALLGWIG EAYQLEVAAG AGAAAFAMGL LMVFLILAAQ YERWTLPLAV
ATAVPFAVLG AALFALLRGF PNDIYFQVGL LVLIGLAAKN AILIVEFAAQ NRATGMTSTE
AAMAAARQRF RAIMMTALTF IIGTLPLVFA TGAGAASRQE IGTVVVGGML AASTLALLFV
PLFYKLLEDV ATWRNERRAR REQEKAAQAD DKEAGNHA
|
|---|
| |