| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_1371 |
|---|
| Symbol | |
|---|
| ID | 4268134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | - |
|---|
| Start bp | 1568957 |
|---|
| End bp | 1571026 |
|---|
| Gene Length | 2070 bp |
|---|
| Protein Length | 689 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638126127 |
|---|
| Product | choline/carnitine/betaine transporter |
|---|
| Protein accession | YP_742210 |
|---|
| Protein GI | 114320527 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.274218 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCAA CGCCGGGGGC GCCGGTGAAC CCGCGGGTCT TTCTGCCGGC GGCGGCCGTG
GTTCTGGCCC TGGTGATGGG GGGCGCGCTC TGGACCGAGC CCTTGGGCCG GGGCTTCGAA
TCGTTGCACC AGATGCTGAT CCAGCACTTC GGCTGGGTCT ACACCACGGT GGTGGCCCTG
CTGCTCGGCT TCGTGCTGGC GGTGCTACTG CATCCCCGGT TCCGGCGCCT GCGCCTGGGG
CCGCCGGACT CCCGGCCTGA ATACACCTAC CTGTCCTGGT TCGCCATGCT CTTTTCGGCA
GGCATGGGCA TCGGACTGCT CTTCTACGGC GTTGCCGAAC CGCTGCTGCA CTACCTGGAG
CCCCCCCACG GCGAGGGCGG GACGGCGGCC GCCGCCGACG AGGCGCTACG GCTGACCTTC
TTTCACTGGG GCCTGCACCC CTGGGCCATT TACATCATCG TGGCCCTGGC GCTCGCCTTT
TTCTCCTATC GCCACGACCT CCCCCTGTCG ATGCGCGCCG CCCTCTACCC GCTGATCGGC
CATAGGATCA ACGGTCCGGC CGGCGATCTC ATGGACAGCC TGGCGGTGGT CGGCACCGTG
CTCGGCGTGG CCACCTCGCT GGGTCTGGGC GTGATGCAGG TCAACGCCGG TCTGGCTCAC
GTAGGGCTCA TGGCGGTCTC CGTCCACAAT CAGATCCTGC TGATTGTCTT TATCATGGCG
ATTGCCACCC TCTCCGTGCT CAGTGGCCTC AACAACGGCA TCCGGATCAT TTCGCGGGCC
AACCTCTTTC TCGGCAGCCT GTTGCTATTG TTCGTGTTCG CCGCGGGCCC GACGGTGATG
ATGCTCTACG GCCTGTTGCA GGCCGTGGGC CACTACGTGC AGGGGCTGGT GGCCCTCACC
CTGCGCACCG ATGTGTTCCA TGGCCAGGGC TGGCAGGCGA GCTGGACCCT GTTCTATTGG
GCCTGGTGGA TCTCCTGGTG TCCCTTCGTC GGCATGTTCA TTGCGCGGGT ATCCCGGGGG
CGCACGGTGG GCGAGTTCAT CCTCGGTACC CTACTGGTGC CCACGGGCTT TACCTTCCTC
TGGATGACGG TGTTCGGCGT CTCGGCCCTG GAACAGGAAA TGCGGGCCGG CGAGTTGGGC
AGCATCGTTC AGGCCGATGT CGCCCAGGCC CTGTTCGCCA TGCTCGAGGC CATGCCACTG
GCCACCCTGA CCGTCCCGCT GGCGACGCTG GTGATCATCG GCTATTTCGT GACCTCCGCC
GACTCCGGGG CATTGGTAAT GAATATCCTC TCCTCCGGGG GCAATCCGAA CCCCCCGCTG
CTGCTGAAAC TCTTCTGGAG CCTGCTCACC GGCGCGGCGG CGGCGGTGCT GCTGCTGGCC
GGCGGCCTGC AGGCCCTGCA AACGGCCACG CTCACCGCTG CCCTGCCCCT GTCCCTGGTC
CTGCTCCTGA TGGCCTGGGG CCTATGGACC GCGTTCCGAG CCGATGCCGC CCAGGTCGAG
GAGATTGGCA CCATGCCGGA GCCGGGGCTG GACCGCTTAT CCCGCTACCT GCGCGAGCGC
CGGGCCCGGG CGCTGCCGCC CGGCGAGGCC GCGGGCTTGC ACGCCCCGGG GCGGTGGTTA
CAGCTCTGGC CGCGCCGGGT CCAGCATTGG CTCCTGCGCC GGGAACGGTT CAAGGACCGT
CAACGGGCGG CGGAGGTCCT GGATGAGGCC GAGGAGGCGG TCCGCCGCTG TTTGGACGAG
ACGGTCTACC CGGCGCTCCA GGCCGTCGCA GAAGAGCTGA ATCGGGAGGG GCACCCGATC
CACGCCGAGC GTACGCGGGA CGGGGCGCAG CTCTGTGTCA CCGGCGAGCA CGGTATGCAC
CCGATCTATG TGGCCCAGGG GCGGGTCTAC CAACGTCCCC AATTCGCCTT CCCCGCCCTG
CACGGCCGGC CGGAACGGCC CCGCCTTGCC ACCGTGCATG TCACCAGCGA TGGCTTGTCC
CGGGAGTGGA GCGTGGACCA TTGTGAGCGC GACACGCTCT ATGCCGATGC CCTGCGCGAG
TGCCGGAAAT GGCTCGACTG GTGGCGCTGA
|
|---|
| Protein sequence | MLATPGAPVN PRVFLPAAAV VLALVMGGAL WTEPLGRGFE SLHQMLIQHF GWVYTTVVAL
LLGFVLAVLL HPRFRRLRLG PPDSRPEYTY LSWFAMLFSA GMGIGLLFYG VAEPLLHYLE
PPHGEGGTAA AADEALRLTF FHWGLHPWAI YIIVALALAF FSYRHDLPLS MRAALYPLIG
HRINGPAGDL MDSLAVVGTV LGVATSLGLG VMQVNAGLAH VGLMAVSVHN QILLIVFIMA
IATLSVLSGL NNGIRIISRA NLFLGSLLLL FVFAAGPTVM MLYGLLQAVG HYVQGLVALT
LRTDVFHGQG WQASWTLFYW AWWISWCPFV GMFIARVSRG RTVGEFILGT LLVPTGFTFL
WMTVFGVSAL EQEMRAGELG SIVQADVAQA LFAMLEAMPL ATLTVPLATL VIIGYFVTSA
DSGALVMNIL SSGGNPNPPL LLKLFWSLLT GAAAAVLLLA GGLQALQTAT LTAALPLSLV
LLLMAWGLWT AFRADAAQVE EIGTMPEPGL DRLSRYLRER RARALPPGEA AGLHAPGRWL
QLWPRRVQHW LLRRERFKDR QRAAEVLDEA EEAVRRCLDE TVYPALQAVA EELNREGHPI
HAERTRDGAQ LCVTGEHGMH PIYVAQGRVY QRPQFAFPAL HGRPERPRLA TVHVTSDGLS
REWSVDHCER DTLYADALRE CRKWLDWWR
|
|---|
| |