| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_1218 |
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| Symbol | secD |
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| ID | 4269749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008340 |
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| Strand | + |
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| Start bp | 1419252 |
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| End bp | 1421117 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638125968 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_742057 |
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| Protein GI | 114320374 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.518755 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGCT ACCCCCTCTG GAAATACCTG ATACTCATCG TGGCGATCAG CCTGGGCGCG
CTCTACGCGT TGCCCAATCT CTTCGGTGAG GACCCGACGC TGCAGATCTC CACAGCGGAA
GGGGATCCCC CTGACCAGGA GACGCAGCAG TCGTTGCTGC GCTTCCTGGA GGAGCAGGGT
GTCCCGGCCA TCGGTGCGGA GACCCGTGAG GGTCAATACC TGATCCGCTT CGACAGCGTG
GACCACCAGA TGGACGCGGC GGACCTGGTC TCCGCCAAGC TTGGCCGCGG GTACACGGCG
GCCATGACCC TGACACCGAG GACACCGGCC TGGCTGCGGG CCCTAGGGGC CGAGCCGATG
TACCTGGGCC TTGACCTGCG CGGCGGCGTG CACTTCCTGC TGGAGGTGGA TGTCAATGCC
CTCAGGGAAC AGACGGTCGA GCGTCACGTC AACGACTTCC GCACCCTGCT GCGGCAGGGC
CGCATCCGCT ACGGTCAGGT GGAGCCCTAC GAGGACCTGG CGGTGCGGGT CTCCTTCCGG
GAGGCGCCGG CACGGGACGA GGCGTTGCGG TTGCTGCAGG AGGACTTCGG CGATCTGGAG
TTCGACCGGG ACGAGGCCGA CGGCAACTAT TACCTGATCG CTCGGATCAC CCAGGACGAC
CTGGATGAGA TCGTTCAGTT CTCGGTCAAC CAGAACATCA CCACCCTGCG CAACCGGGTC
GATGAGCTGG GCGTGGCCGA GCCGGTGATC CAGCGTCAGG GTGCCGAGCG CATTGTTGTG
CAGTTGCCCG GGGTACAGGA TCCGGCCCGG GCCAAGGAGA TCCTCGGTGC CACCGCGACC
CTGGAATTCC GCTTGGTGGA TATGGAGCGC TATCCCTTCA CCGGGGATCC CGAGGCGCCA
CGCCTGCCAC CCGCGGCGGA GCTGTTCCAG GAGCGCGACG GCAACTACGT GGTGCTGCAA
CGGGATGTGA TGATGACCGG CGACCGCATC GTTCATGCGG CGTCGGGGAT CGACCAGGAG
ACGGGCGGTC CCCAGGTCAA CATCCGGCTC TCCGGCGCAG CCGGACGGCA GTTCAACCGC
ATCACCCGAG AGCACGTGGG CGATCTGATG GCGGTGGTCT TCATCGAGCG CCAGTCGGAG
ATGGTGCTGG TGAACGACGA GCCGCAGCGT GAGGTCACCG AGGTGCGCGA GGTGATCAGT
GTCGCCAATA TCCGCGAGCC CCTGGGGGCC AGCTTCCGGA TCACCGGGCT GGACAGCACC
CAGGAGGCGC GCAACCTGGC GCTGCTGTTG CGTGCCGGCG CCCTGGCCGC GCCCATCGAT
ATCGTCGAGG AGCGCACCAT CGGCCCGAGC CTGGGCGCCG AGAACGTACG CCAGGGCTTC
CTGGCGGTGG TCATCGGCTT CGCCCTGGTG GTGGTCTTCA TGGCCTTCTA CTACCGGGTC
TTTGGGCTGG TGGCCAACCT GGCGCTGATC ACCAACCTGG TGCTTATCGT CGCGGTCCTG
TCGCTGCTGC AGGCCACCCT GACCCTGCCG GGTATCGCCG GGATAGTGCT CACGGTGGGT
ATGGCGGTGG ACGCCAACGT TCTGATCTTC CAGCGAATAC GCGAGGAGTT GCACGCCGGA
TCCAGTATCC AGCGGGCCAT CGACCAGGGC TACGGCAAGG CCCTGTCCAC CATCGCTGAC
GCCAATGTGA CCACGCTGAT CGCCGCGGTG GTGCTGTTCG TGTTCGGCAC CGGGCCGGTG
CAGGGGTTCG CAGTCACCCT GTCCATCGGT CTGGTGACCT CCATGTTCAC GGCCATCCTG
GGCACCCGCG CGGTCATCAA CCTCATCTAC GGCGGCAACA AGCGCGTCGC CGAGCTCAAG
ATCTGA
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| Protein sequence | MNRYPLWKYL ILIVAISLGA LYALPNLFGE DPTLQISTAE GDPPDQETQQ SLLRFLEEQG
VPAIGAETRE GQYLIRFDSV DHQMDAADLV SAKLGRGYTA AMTLTPRTPA WLRALGAEPM
YLGLDLRGGV HFLLEVDVNA LREQTVERHV NDFRTLLRQG RIRYGQVEPY EDLAVRVSFR
EAPARDEALR LLQEDFGDLE FDRDEADGNY YLIARITQDD LDEIVQFSVN QNITTLRNRV
DELGVAEPVI QRQGAERIVV QLPGVQDPAR AKEILGATAT LEFRLVDMER YPFTGDPEAP
RLPPAAELFQ ERDGNYVVLQ RDVMMTGDRI VHAASGIDQE TGGPQVNIRL SGAAGRQFNR
ITREHVGDLM AVVFIERQSE MVLVNDEPQR EVTEVREVIS VANIREPLGA SFRITGLDST
QEARNLALLL RAGALAAPID IVEERTIGPS LGAENVRQGF LAVVIGFALV VVFMAFYYRV
FGLVANLALI TNLVLIVAVL SLLQATLTLP GIAGIVLTVG MAVDANVLIF QRIREELHAG
SSIQRAIDQG YGKALSTIAD ANVTTLIAAV VLFVFGTGPV QGFAVTLSIG LVTSMFTAIL
GTRAVINLIY GGNKRVAELK I
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