| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_0648 |
|---|
| Symbol | |
|---|
| ID | 4270838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | - |
|---|
| Start bp | 699563 |
|---|
| End bp | 703240 |
|---|
| Gene Length | 3678 bp |
|---|
| Protein Length | 1225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638125397 |
|---|
| Product | peptidoglycan-binding LysM |
|---|
| Protein accession | YP_741492 |
|---|
| Protein GI | 114319809 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1388] FOG: LysM repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.323072 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.0929491 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCCA TACACACCGT ACGCGACGGC GACACCCTCT GGGGCATTGC CCGGCAGCAT
GGCGTGCCCC CGGCAACCCT GATGACCCTG AACCCCGACA TCGAACACCC TGACTGCATT
TACCCCGGGC AGCAGGTTCG GCTTCCGGAG AACCGCGAGC GCCTTTCGGA CAGCCGGGCA
CCGGGCGACG TCTGCCACCC CGCACCGTGC GAGGTGGCGG TCGAGCAGAT CACCCTGCTG
CCCTTGCGCT ACGCCCTGGT GGAACCCGAG GCGATCGCCG GCGCCCGGAT CCGGGCGCCC
TATCCGCCGC TTGGCACGCG GCCGATCGGC GTGCGCCTTG CGCGGGAGGG GTACCTCTAC
GTGATCGAGC AACCGCGCGC TCCCGGCGAG CAGCCACTCC GGCTGTACGA ATTCCGGCTG
CAGGCGATGA CCCTGACCCG GCTGCTCGAT GGGGTCGAGG GCGTGACCGA AGACCGGCGC
GAAAAGGCGC AGGGCGCGCC CCATCTCACC TTCGGCTCCG CCGCTCGTCT CCAGGCCGCC
TATGCCACGG CCCAGTGGAG CGCCGCCCGA TGCAACCGCA TGCTGGAGAA CCCGGGCGAG
CGCAACCGCC GCATGCAGTC CGTGGATCTG GCGCGGGCGG CTGCCGGCTT CGACGGAGAC
GACCCGACCA GCGTGGAGCC GCTGCTCGCC AGCGACCGGA TCCGCCCGGC CGTGGCGGAG
CTGCACGAGC CACCCGCGAG CGGCACGCCG GAGAGCCCCA TGGAGGCGGA ACGAAACCCC
TACCCCTGGA CGGCCCCGCC ACCGCCGCCA CCCGAGGCAA AGGCGGCCGA ATCGGGCGGG
GGAGGCGGTT CGGACACAGA CGGGGCGGCC TTTCCCGCCG GGCCGCCCCC CGCACCCTTC
GAACGCACCA CGCTGGACGA CCTGCTCGGG CACTGGGCGC CGGAGGGTGT CCCGGACGAG
CGCCTGTACG GCCTGATACT GCGCGACGAC CTGGGCCTGC TCCAGGAGCT CGCCGATTAC
CAGGACCACG TGGTCGGGTG GCTGGATAGC TGGGCGCGAG AGCACGAGAC CCGGTACGTG
GCCGGCGGGT TCATCGAATC CCTCTTCCTG CTCGACGAGG AGGGCTTTGT GGATGACCCC
CGCTTCCGGG CGTTGCGCGA GGAGACCAGC GAAGCACAGC AGCGCGCCAT CCTCGACTAC
CTCAACAGCC TGGAACACGA ATCCGGCGGG TTCCTGGCAT CGACCCGGCG GGCCTTCGGC
AGCGGCGAGG GCTTGCTCGA AGCCATCAAC CCGTTCGCCG AGCCCGCCCA CCGCCGCGTG
GCCCAGGCCC GCCAGCAGAT GATGGACACC CTGGGCCCCG AGCTCCGGGA ACGCCACCAG
CACCTGATCG ACGAGCAGCG CGACGCCCTC CGGGCGCGGC TGCAGGGTGC CGGGCTCGGC
TCCAGGGGGC TGCTCGAGCT TGTCGAGCGG GACGCCATGG GCGACTTCCT CGACACCCAC
CGGGCGCACC TGCGGCGCTG GCACGCGCTG CTCGATCGCA TCACCGAGGA CCGGGTCCGC
CTGGTCGAGA CCAACCACTT CCACGAGGCG GCCTGGTACT TCGACCCCGC ACTCGACGAC
CAGCTCCAGC AGGCCCTGTA CACCGAGTAT GCCTGCCTGC GGGACATCTG CCGCACCGAC
GAGGCCGCCG AGTCCATCGC CGACTGGCTC GACGCCCACC CCCAGTGGAA CGAACCGCTG
TTCCACACGC TCCACCCGGG CGACCAGCGC CGGGCCGCCC GGGAGCTGGA AGAACTCGCG
CAGGTGACCT ACGTAACCGC CGGCACCCTG CAGGCGCCCG AGACCGTCGA AAGCTTCCAT
CAACTGGCGC TCCGGCTTCA GGCCATCCGG GAGACCTACG CCCTGCCCGC CGCCCGGGAG
CTCGGGCAGA CGGCGATGGG GCTGGATGAG CTGCGCCGTG CCACCTTCCG GCCGGCCCGC
GAACTGCGTT TCGCCCAGGC CCTGGACGAA ACGCTGCAAC GATTCCAGGC CGGCGGCAAC
CTCGACCTCG ACGACATCTT GCGCCGCGTG CCCGGCGCCG CCTGGCTGGA CATGGTGCGG
GGGTTCGCCG AACACGGCGC CAGCGTCGAG CTGCCCACGG AACGCCACGT GCGGCGCTTC
AACGCCGACG TGGACCAGGC CCTCGCCCTC CGCGAGGCGC TACGCGGCGC GAACCGCCGC
CTGAAGGACG AAGGGGTACG CCGCCGCCGG GGCGTCATCG ACGCCAGGGT CTACCGGGAA
ACCCGGCGGG ATATGCAGCA ATACCGCGAG CGCATTCGCG GTCAGTTGCT TTACGTGGAA
CGGCGCCTGG CCGGCGCCAT CAACCCCCTG AAGGGGACGG ACAACCGCGT GGGCCTGCAG
TTGCGGGGGC TGGACGCCGA CACCCACCGG GAGATCCGCC GCATGGCCGA CGACGCCCGG
GCCGGCCGCC CCCTGCAAAC CCGCGCCGAC GCCGGCCGCG TGCTCCGCAG CGACGGGCTT
TCCGTGGTGA TCGCGGTGCT GCAGTTGCGC AATCTGGGGA GTGCGTACGT CGAGTTTCGC
GACAAAGAGC AAAGGGGCCT GCGCGACCTG TTGGCAGTAC TTGGCGGTTT AGTCAATGCC
GCGGCCCCCA CCTTCGCCGC CGCCCAGGGC ATCGGCATCA GCCTGCTCGC GGTGCAGCTA
CCCCGGGTGC GCAGCCAGAT GGCCCGGGGC GCGGTGGCCG CCCGCCTCGG CTGGCTCACC
GGGCACCTGG GCACCGGGGC GTACGGCCTG GGCTTTCTTG CTTCGCTCTC GGAGACCGGC
CGCAGCCTCC ACCGCTGGGG CGACGCCCTG CAACGGGGCG ATGGCCAGGC CCTGGCCGCC
GCCACCCTCA CCCTGGCCGG GTCCGGCGGG CTGACCGCCA CCCAGGGCTG GGGCTTCTGG
CGGAATACCA CGTTAGTGGT CTCCGCCTAC CAGGAGGGCG GACTCAGCGC CGCCGCCTGG
GCCACCCGCA GCGCCCGCTT CGTCGCCATC TTCGTGCGCG TCAACCTCCT CGGCCTGCTC
TTCACCCCCG TCTATCTCGG CGGCCTCTGG TGGTACCGCC GCAACCAGCG CGACGCGCTG
GCCACCTGGC TGGAGCAGAG CGCCTGGGGG GTGGCCGATG CGGGGCTGGA TCTGGAGACC
CACCGGCGCC GCTGGGTGAA TGCCCTCGTC GAACCCCGGC TCACCCTGCG CCGGGTGGAC
GGGCAGGCGG AACTGGAACT GGTGATCCCG GACCTGGCCC CGGAGGATCT CGCCGCCGGT
GCCGCGCGGC TGGCCGCCCT GCGCAAGGCC CCCGACCAGT GGTGGGCCCC CTGGAGCCAG
TCGCTCGCCG AGCAGCTCGA AGCATCGCCC GACGCGCCCA CGACCCTGCG CCTGCCGCTG
TTTCCGGAAG AACTCAACGC CCAGACCGGC CTCTCCCTGC GCCTGACCTA CCCCTCCGCG
TTGGTCCCCG GCCTGGAGCG GGAGGTCCAC TTCCACCTGG ACACCCTCAA CCCCGACCCG
GTGCCCACCT TTTTCCAGGC CCTGTCCGGC GGACGAGAGG ACGGCTCGGC CGAACGCCCC
ATCCAACCCT TGTCCGGGCG GGCGTGGACC ACCGGCAGCC CACCGACCGT GCCCTTGCAA
CCCGGGAAGA AACCATGA
|
|---|
| Protein sequence | MSAIHTVRDG DTLWGIARQH GVPPATLMTL NPDIEHPDCI YPGQQVRLPE NRERLSDSRA
PGDVCHPAPC EVAVEQITLL PLRYALVEPE AIAGARIRAP YPPLGTRPIG VRLAREGYLY
VIEQPRAPGE QPLRLYEFRL QAMTLTRLLD GVEGVTEDRR EKAQGAPHLT FGSAARLQAA
YATAQWSAAR CNRMLENPGE RNRRMQSVDL ARAAAGFDGD DPTSVEPLLA SDRIRPAVAE
LHEPPASGTP ESPMEAERNP YPWTAPPPPP PEAKAAESGG GGGSDTDGAA FPAGPPPAPF
ERTTLDDLLG HWAPEGVPDE RLYGLILRDD LGLLQELADY QDHVVGWLDS WAREHETRYV
AGGFIESLFL LDEEGFVDDP RFRALREETS EAQQRAILDY LNSLEHESGG FLASTRRAFG
SGEGLLEAIN PFAEPAHRRV AQARQQMMDT LGPELRERHQ HLIDEQRDAL RARLQGAGLG
SRGLLELVER DAMGDFLDTH RAHLRRWHAL LDRITEDRVR LVETNHFHEA AWYFDPALDD
QLQQALYTEY ACLRDICRTD EAAESIADWL DAHPQWNEPL FHTLHPGDQR RAARELEELA
QVTYVTAGTL QAPETVESFH QLALRLQAIR ETYALPAARE LGQTAMGLDE LRRATFRPAR
ELRFAQALDE TLQRFQAGGN LDLDDILRRV PGAAWLDMVR GFAEHGASVE LPTERHVRRF
NADVDQALAL REALRGANRR LKDEGVRRRR GVIDARVYRE TRRDMQQYRE RIRGQLLYVE
RRLAGAINPL KGTDNRVGLQ LRGLDADTHR EIRRMADDAR AGRPLQTRAD AGRVLRSDGL
SVVIAVLQLR NLGSAYVEFR DKEQRGLRDL LAVLGGLVNA AAPTFAAAQG IGISLLAVQL
PRVRSQMARG AVAARLGWLT GHLGTGAYGL GFLASLSETG RSLHRWGDAL QRGDGQALAA
ATLTLAGSGG LTATQGWGFW RNTTLVVSAY QEGGLSAAAW ATRSARFVAI FVRVNLLGLL
FTPVYLGGLW WYRRNQRDAL ATWLEQSAWG VADAGLDLET HRRRWVNALV EPRLTLRRVD
GQAELELVIP DLAPEDLAAG AARLAALRKA PDQWWAPWSQ SLAEQLEASP DAPTTLRLPL
FPEELNAQTG LSLRLTYPSA LVPGLEREVH FHLDTLNPDP VPTFFQALSG GREDGSAERP
IQPLSGRAWT TGSPPTVPLQ PGKKP
|
|---|
| |