Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mlg_0061 |
Symbol | dapF |
ID | 4270339 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alkalilimnicola ehrlichii MLHE-1 |
Kingdom | Bacteria |
Replicon accession | NC_008340 |
Strand | + |
Start bp | 67016 |
End bp | 67855 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 638124786 |
Product | diaminopimelate epimerase |
Protein accession | YP_740908 |
Protein GI | 114319225 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGTCC GTTTCACCAA GATGCAGGGG CTGGGCAACG ACTTCGTGGT CATCGACGCT GTGCGCCAGC CCGTCGAGCC CAGCCCGGAG CAGATCCGCC ACATCGCCGA CCGCCGTTAC GGCGTCGGCT GCGACCAGGT CCTGCTGGCG ACACCGGCGC GGCGCAGCCA GGCCGATTTT GGCTATCTCA TCTTCAACCC GGACGGCAGC CAGGCCGAGC ATTGCGGCAA CGGGGTGCGC TGCCTGGCCC GCTTTCTCGA TGATCGCGGC CTGGTGCCCG CCGGCCGCCA CGAGTTGGTG ATCGAGACGA TCAACGGCCT CTCCCGGGTG CGTCTGTGCG ACGACGGTCC GGTCACCGTG GACATGGGGG CGCCGGTGCT GGAGCCACCC CACATCCCCT TCCGGGCGCC CAGCCGGGCG CGGGAGTACG AGCTGGAGGT GGAGGGCCAG GTGGTGCGCC TGGGTGCGGT CTCCATGGGC AATCCCCACG CCGTGCTGCG GGTGGATGAC GTGGACAGTG CGCCGGTGGA GACCTTGGGC CCGGCCATCG AATCCCATTC CCGCTTTCCG CGCCGGGTCA ATGTCGGCTT CATGCAGGTG CTCACCCCGA CCCACATCCG CCTGCGGGTC TACGAACGGG GCGCCGGTGA GACCCTGGCC TGCGGCACCG GCGCCTGCGC CGCGGTCGTC TCCGGGCGGC TGCGCGGCTG GTTGGAGGAG GCGGTGGACG TGGACCTGCC CGGCGGACGC CTCGTGATAC ACTGGGCCGG CGACGGTGAA CACGTCTGGA TGACCGGCCC GGCGGAGACG GTATTCGAGG GGGAGATCCG TCTCGATTGA
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Protein sequence | MKVRFTKMQG LGNDFVVIDA VRQPVEPSPE QIRHIADRRY GVGCDQVLLA TPARRSQADF GYLIFNPDGS QAEHCGNGVR CLARFLDDRG LVPAGRHELV IETINGLSRV RLCDDGPVTV DMGAPVLEPP HIPFRAPSRA REYELEVEGQ VVRLGAVSMG NPHAVLRVDD VDSAPVETLG PAIESHSRFP RRVNVGFMQV LTPTHIRLRV YERGAGETLA CGTGACAAVV SGRLRGWLEE AVDVDLPGGR LVIHWAGDGE HVWMTGPAET VFEGEIRLD
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