| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_0052 |
|---|
| Symbol | |
|---|
| ID | 4270921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | + |
|---|
| Start bp | 55586 |
|---|
| End bp | 56923 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638124777 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_740899 |
|---|
| Protein GI | 114319216 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.808473 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCTGCC GTAACCGAGT CGTTTGGCGT GAAGGGGCGT TCATCAAACC GCACCACTTC
CAGCAACAAC AGCGCAGCCT CGAGGGGCTG CTGGACCTGC GGCTGCAGGC GGTCAGCGGC
TACAGCCACG GCTTCCTGCA ACTGGAACTG AACAGCGAAT TCCTGGGCTT CGGCCGGATT
GCGCTCACCC GGGCCCGCGG CATCATGCCG GACGGCACCG CCTTCGACCT GCCGGGCGAT
GACCTGGAGC CACCACCACT GGCCGTGGAC GAGGCCGGCA TGGCCAACCA GCGGGTCTAC
CTGGGGCTGC CCCTGGCCGG TGATGGCGTG GCCGAGGTCA GCGACGAGGA CGCCATCAGG
GATGATGGCC GCTACCGCCT GCATCGCCGG GAGATCTGGG ATCTTCACAC CAGTCCTGGA
GATGTCGCTG AACTGGCGGT GGCCCGCGCC GCCCCGCGCC TGCTGTTGGA GCACGATGAC
CGCAGCGGTT ATGCCTGCCT GGCAGTGGCG CGGATACTGG AGCGGCGCCC GGATGGTTCA
CTGGTACTCG ATCCCGACTT TATCCCCACC ACCCTGACCA CCCGGGTGGC GCCCGGCCTG
CAGCGGTTCA TTGGTGAGGT GGCCGGGTTG ATGCAGGCGC GAGCGCGTCG GATCGCACAG
CGGCTGGCCG CTCCGCAGCA GGCCGGGGTG GCTGATGTCT CCGACTTCAT GCTGCTGCAA
TTGCTGAACC GCCTGCAGCC CCGGTTCCAG CACCTGCAAC AGCACCGGCG GCTGCACCCG
GAGGCCCTCT ACAGCCACAT GCTGGAGGCC TGCAGCGAAC TGGCGACCTT CACCGACGAG
TCGCGGTTGC CCCGGCGCTA TCCTCCCTAC GACCACGATG CCCCCGATAC CGCCTTCCGT
GCGCTCATGC AGGGGCTCCG TCAGGCTCTC TCCACCGTGC TGGAGGCCCG AGCGGTGGCC
ATTCCCCTGG AGGCCCGCCG TCACGGGCTC ATGCTCGCGC CGCTAAGCGA TTCGACGCTG
CTGGACGAGG CCGAGTTCGT GGTCGCCGTG CGCGCGGACA TGGCGGTGGA GACGCTGCGC
CGACAGTTCA TCCAGCAGAC GAAGATCGCC GGTATCGAAC GCATCCGCGA CCTGGTCAGT
CTGCAACTGC CCGGCATTCC GCTCGTTCCG CTGCCGGTCG CGCCGCGCCA GCTCCCCTAT
CACGCGAGTC ATATCTACTT CCAGCTCGAC CGTCGCAGCG AGGCCTGGGG CCTGCTGACC
GGTGCGAGCG GTTTCGCCTT CCACCTGGGT GGTGACTTCC CAGGGCTGGA TCTCCAGTTC
TGGGCAATAA GGAGTTGA
|
|---|
| Protein sequence | MVCRNRVVWR EGAFIKPHHF QQQQRSLEGL LDLRLQAVSG YSHGFLQLEL NSEFLGFGRI
ALTRARGIMP DGTAFDLPGD DLEPPPLAVD EAGMANQRVY LGLPLAGDGV AEVSDEDAIR
DDGRYRLHRR EIWDLHTSPG DVAELAVARA APRLLLEHDD RSGYACLAVA RILERRPDGS
LVLDPDFIPT TLTTRVAPGL QRFIGEVAGL MQARARRIAQ RLAAPQQAGV ADVSDFMLLQ
LLNRLQPRFQ HLQQHRRLHP EALYSHMLEA CSELATFTDE SRLPRRYPPY DHDAPDTAFR
ALMQGLRQAL STVLEARAVA IPLEARRHGL MLAPLSDSTL LDEAEFVVAV RADMAVETLR
RQFIQQTKIA GIERIRDLVS LQLPGIPLVP LPVAPRQLPY HASHIYFQLD RRSEAWGLLT
GASGFAFHLG GDFPGLDLQF WAIRS
|
|---|
| |