| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_0003 |
|---|
| Symbol | |
|---|
| ID | 4269534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | + |
|---|
| Start bp | 2816 |
|---|
| End bp | 3880 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638124730 |
|---|
| Product | DNA replication and repair protein RecF |
|---|
| Protein accession | YP_740852 |
|---|
| Protein GI | 114319169 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1195] Recombinational DNA repair ATPase (RecF pathway) |
|---|
| TIGRFAM ID | [TIGR00611] recF protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00180653 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.423581 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACTGG CGGCCGAAGG GGTGCGCAAC CTCCAGCCGT TTGAGCTTAC GCCTGGCGCC
GGAATCAACG TGGTGGTGGG TGCCAACGCC GCGGGGAAGA CGAGCCTGTT GGAGGCCATC
TACTTCGTGG CGCGGACCCG GTCCTTCCGC GCCACGCGGA CGGCGCAAAT GATCGGGAAC
GGTCATGAGG CCTTGTGGGT TCGGGCTCAG ACTCAGGGGC ATACCATCGG GGTCGCCCGG
GACAGCCAGG AGACGCAGGT CCGTCTGGAC GGTCGGGACG GGCGAAGCCT TTCCGAACTG
GCCCGCTACC TACCGGTGCA GGTCATCAAT AGTGAGCACC AGCGGTTATT GCTGGACGGC
CCTGCCGTGC GGCGCAGTTT TTTGAACTGG GCGGTGTTCC ACGTGGAACC ACAGTTCTCA
ACTGTGTGGG GCCGTTACGT CCGCGCCCTC CGGCAGCGCA ATGCTGCCCT CAAGGCGGGC
GAGTCCCGCT TGGCGTGGGC CTACGACGAG GGCCTCATCG AAACGGCCGA CACCATCGAC
CGTAACCGGC GCCACCTCAT CGACGCCCTG GAGCCGCGCT GGTCGGCCTT GGTCCGCCGC
TGGCTGCCGG ACGAACCGGT GGCCCTCCAT TACCGCCCGG GCTGGCGGAG CGACGAGCCG
CTCGCTGATC GCCTTGAAGC CCAGCGGGAG TTGGATCGTC AGCGGGGGTT CACCAACAGT
GGGCCGCATC GCGCCGATCT GAGTTTCCGC GTGGCCGGTG TCGAGGCCCA GCACCGGCTC
TCGCGCGGAC AGCAAAAGCT TCTGGTGCTC GCCCTGCTGC TCGCCCAGGC AGCGGTTACC
CACACCCTGA CCGGCCAGTC GCTCACCTTG TTGGTGGATG ACCTCGCTGC GGAGCTCGAC
CCGGCGCGGC GTGCCGCCGT GGTGGAGGCG ATCGCCTCCA GTGGCAATCA GGCCTTCCTG
ACCGCCATTG AGCCGGGCGA TATCCCCCTC GCCCCCGACG CCGCGCAATG GTTCCACGTG
GAACAGGGCC GTATTCACTC CGGCCCGCCG CCGGCGGCCG GCTGA
|
|---|
| Protein sequence | MSLAAEGVRN LQPFELTPGA GINVVVGANA AGKTSLLEAI YFVARTRSFR ATRTAQMIGN
GHEALWVRAQ TQGHTIGVAR DSQETQVRLD GRDGRSLSEL ARYLPVQVIN SEHQRLLLDG
PAVRRSFLNW AVFHVEPQFS TVWGRYVRAL RQRNAALKAG ESRLAWAYDE GLIETADTID
RNRRHLIDAL EPRWSALVRR WLPDEPVALH YRPGWRSDEP LADRLEAQRE LDRQRGFTNS
GPHRADLSFR VAGVEAQHRL SRGQQKLLVL ALLLAQAAVT HTLTGQSLTL LVDDLAAELD
PARRAAVVEA IASSGNQAFL TAIEPGDIPL APDAAQWFHV EQGRIHSGPP PAAG
|
|---|
| |