Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_4032 |
Symbol | |
ID | 4257890 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 4789880 |
End bp | 4791505 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638124724 |
Product | protein translocase subunit yidC |
Protein accession | YP_740066 |
Protein GI | 114049516 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000158142 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000218645 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAATCTC AACGCAATAT ATTGCTAATA GGACTACTGT TTGTCAGCTT TTTGCTGTGG CAACAGTGGC AAGCAGACAA AGCTCCAAAA CCCGTTGCAA CCGAATCGTC TGTAGTGGCG AATGCGACCA CTAATCACAG TGCTGATGTT CCAGAAGCAG ATACAGGTGT GCCAGCCGCA ATGACGGCAA CGCAAAATCT GATCACTGTT AAGACTGATC AGCTCGATGT ACAAATCAAC CCTGTGGGTG GTGACATCGT TTTTGCAGCT CTGGTTTCAC ACAAACTGGA ACAGGGTAAA GACCAGCCAT TTGTTTTGCT TGAGCAAACC AAAGATTTCA CCTATATCGC TCAGAGTGGC CTGATTGGCC GTGATGGTAT CGATAGCAGT GCTAAAGGTC GCGCCGCATT TGCCGCCAGC AAAACTGAAT TTACCTTAGC CGATGGCCAA GACACCTTAG AAGTACCACT GACCTATGTG GCTGATAACG GTGTTACTTA CACAAAAGTG TTTGTGTTCC ATCGTGGCAA GTTTAACGTT GATATCGATT ACAAAATCAA CAACACCTCA GCTGCTCCAT TGCAAGTTCA GATGTACGGT CAGATTAAAC AGACCATCAA ACCATCTGAA AGCAGCATGA TGATGCCAAC TTACCGTGGC GCCGCGTTCT CGACTCAAGA TGTACGTTAC GAAAAATACA AGTTTGAAGA TATGAGCAAG AGCAACCTCA ATCAACCGAC TCTCGGTGGT TGGGCGGCGA TGCTGCAACA TTACTTCGTA TCAGCTTGGA TCCCACCAGC AACCGATAGC AACACCATTT TCTCAAGTGT AAGTGCTGGC GGACTGGCTA ACATTGGTTT CCGTGGCGCG GTATATGATA TTGCACCAGG TGCGACTCAA GAAATTAGCT CACAGTTTTA TGTTGGTCCT AAGGATCAAA AAGCGCTATC TGCGTTATCT GATACTTTAA ACCTGGTTGT TGATTACGGT TTCCTTTGGT GGTTAGCCGT GCCAATCCAC TGGTTATTGA TGTTCTATCA ATCATTTGTG GGTAACTGGG GTGTGGCAAT TATTCTGATC ACCTTAACCG TTCGTGGTTT ACTGTTCCCG CTGACTAAAG CGCAGTACAC CTCAATGGCG AAGATGCGTA ACCTACAGCC AAAACTGCAG GATTTGAAAG AACGCTTCGG CGATGACCGT CAAAAGATGG GTCAAGCCAT GATGGAACTG TACAAGAAGG AAAAAGTGAA CCCTATGGGT GGCTGTTTAC CTATCCTGTT ACAGATGCCA ATCTTCATTG CCTTGTACTG GGTATTGTTA GAAAGCTTCG AACTGCGTCA CGCGCCATTT ATGTTATGGA TCCACGACTT ATCAGTACAA GATCCATACT ACATTCTGCC GCTGCTGATG GGTGTGTCTA TGTTTGTTAT GCAAAAAATG CAACCCATCG CACCGACCAT GGACCCAATG CAAGTGAAGA TGATGCAATG GATGCCAGTG ATCTTTACCG TATTCTTCCT GTGGTTCCCA TCGGGTCTAG TACTGTACTG GTTAGTGGGT AACATTGTTG CCATTATCCA GCAGAAGATT ATTTATGCAG GTCTAGAGAA AAAAGGCTTA AAATAA
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Protein sequence | MESQRNILLI GLLFVSFLLW QQWQADKAPK PVATESSVVA NATTNHSADV PEADTGVPAA MTATQNLITV KTDQLDVQIN PVGGDIVFAA LVSHKLEQGK DQPFVLLEQT KDFTYIAQSG LIGRDGIDSS AKGRAAFAAS KTEFTLADGQ DTLEVPLTYV ADNGVTYTKV FVFHRGKFNV DIDYKINNTS AAPLQVQMYG QIKQTIKPSE SSMMMPTYRG AAFSTQDVRY EKYKFEDMSK SNLNQPTLGG WAAMLQHYFV SAWIPPATDS NTIFSSVSAG GLANIGFRGA VYDIAPGATQ EISSQFYVGP KDQKALSALS DTLNLVVDYG FLWWLAVPIH WLLMFYQSFV GNWGVAIILI TLTVRGLLFP LTKAQYTSMA KMRNLQPKLQ DLKERFGDDR QKMGQAMMEL YKKEKVNPMG GCLPILLQMP IFIALYWVLL ESFELRHAPF MLWIHDLSVQ DPYYILPLLM GVSMFVMQKM QPIAPTMDPM QVKMMQWMPV IFTVFFLWFP SGLVLYWLVG NIVAIIQQKI IYAGLEKKGL K
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