| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_4031 |
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| Symbol | trmE |
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| ID | 4257889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 4788414 |
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| End bp | 4789775 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638124723 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_740065 |
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| Protein GI | 114049515 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.608873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.001302 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGACAACTG ACACTATCGT GGCACAGGCC ACCGCGCCCG GACGGGGCGG CGTGGGTATC
ATTCGTATCT CTGGTGATAA GGCAACTGAT GTGGCCATGG CCGTATTGGG TCATTTACCT
AAACCCCGTT ACGCCGATTA TTGCGACTTT AAAAATGCTT CAGGCCAAGT GATAGACCAA
GGTATCGCAC TGTATTTTAA AGGCCCTAAT TCCTTCACGG GTGAAGATGT ATTAGAGCTG
CAGGGCCACG GTGGTCAAAT CGTCCTCGAT ATGCTGATCA AGCGCGTATT AGAAGTCGAA
GGCATTCGCA TCGCCAAACC AGGCGAGTTT AGCGAACAGG CCTTTATGAA TGACAAGCTG
GACTTAACCC AGGCCGAAGC GATTGCCGAC CTTATCGATG CCACCAGTGA GCAAGCCGCC
AAAAGCGCGC TGCAATCACT GCAAGGTGAG TTTTCGAAGG AAGTTCATGA GCTGGTGGAT
CAAGTCACCC ATCTGCGTTT ATACGTCGAA GCCGCGATTG ATTTCCCCGA TGAAGAAGTC
GACTTTTTAA GTGATGGCAA AATTGCCAAC GCACTCTACA AAATCATCGA CAAACTCAGC
GTCGTCCAAG CCAGTGCCAA GCAAGGCTCG ATTATCCGCG AAGGTATGAA AGTGGTGATT
GCCGGTCGCC CCAATGCAGG AAAATCCAGT CTGCTTAATG CGCTCGCCGG TAAAGAGTCG
GCGATTGTGA CCGAAATTGC AGGTACCACC CGCGACGTAT TGCGTGAGCA TATCCATTTA
GATGGTATGC CACTGCATAT TATCGACACC GCAGGCCTGC GTGACACCAC AGATACGGTT
GAACAAATCG GTATCGAGCG GGCGTGGAAC GAAATCAACA GCGCCGATCG CGTGTTATTT
ATGGTCGATG GCACCACCAC GGATGCGGTC GATCCCCACG ATATTTGGCC CGATTTTATC
AATCGCCTCC CCGCTAATTT AGGCGTGACA GTTGTCCGCA ACAAAGCCGA TCTCACCGGT
GAGAACCTCG CTATGACCGA AGAAAAAGGT TACAGCGTGT ATCGGATCTC GGCAAAAACA
GGCCTTGGCG TTGAGGAATT AAAGCAACAC CTTAAATCCT TGATGGGTTA TCAGAGTAAT
CTCGAAGGTG GCTTTATCGC CCGTCGTCGT CACCTCGAAG CATTGGATAT TGCCGCAAGC
CATCTGCAAC TCGGTAAAGA GCAATTAGAA ATTTACCTCG CAGGTGAACT ATTAGCGGAA
GAACTGAGAA TGGCGCAATT AGCCTTGTCC GAAATCACAG GCCGCTTCAC CTCAGACGAT
CTACTGGGCA AAATTTTCAG CTCATTCTGT ATCGGCAAAT AA
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| Protein sequence | MTTDTIVAQA TAPGRGGVGI IRISGDKATD VAMAVLGHLP KPRYADYCDF KNASGQVIDQ
GIALYFKGPN SFTGEDVLEL QGHGGQIVLD MLIKRVLEVE GIRIAKPGEF SEQAFMNDKL
DLTQAEAIAD LIDATSEQAA KSALQSLQGE FSKEVHELVD QVTHLRLYVE AAIDFPDEEV
DFLSDGKIAN ALYKIIDKLS VVQASAKQGS IIREGMKVVI AGRPNAGKSS LLNALAGKES
AIVTEIAGTT RDVLREHIHL DGMPLHIIDT AGLRDTTDTV EQIGIERAWN EINSADRVLF
MVDGTTTDAV DPHDIWPDFI NRLPANLGVT VVRNKADLTG ENLAMTEEKG YSVYRISAKT
GLGVEELKQH LKSLMGYQSN LEGGFIARRR HLEALDIAAS HLQLGKEQLE IYLAGELLAE
ELRMAQLALS EITGRFTSDD LLGKIFSSFC IGK
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