Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3995 |
Symbol | |
ID | 4257853 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 4740151 |
End bp | 4740993 |
Gene Length | 843 bp |
Protein Length | 280 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638124684 |
Product | rhomboid family protein |
Protein accession | YP_740029 |
Protein GI | 114049479 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00110696 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0215487 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGAGA TTGGCAGACT CCCCAACAGC AGAGCCGCGC AGGCCTTTGT CGATTACCTC AAAGGTGAAC AGATAGACTG CCAGATTCAG CCATTGCCGC AGGGAGTCGC TATTCTGGTT ATCCGCGATC AAGATGCCGA GAAAGCCCGT AAAGAGTTCG CCCATTTTAT CGCTCATCCT TACGATAACA AATACTTACA AGCCTCGTGG GAGCATGGTG ATACTCATAC TAAGCTCGAC TATGGCGCCC CTTCTTTACA GCTTTTTGCG CAATTTATCA CAGGTGCAGG CCCAGTTACT CTTATCATCT TTGGCCTCTG TGTACTGATT TATGCCGCGA TGAATTTAGG CTTCGGCGGC CCAGTTTATG AAACGCTCTC CTATTTCGGT GCGGTACCTG ACACCAGCGT TAGTCAATTC TGGCGCGTAT TTACCCCAAG CCTGATGCAC TTTTCGGCCA TGCATATCAT CTTCAACTTA CTCTGGTGGT GGTATTTGGG TGGAAAAATC GAGACTCGCA TCGGCACAGC CCCGCTGTTA ATCCTGCTAC TGGTCGCGGG TACTTTACCC AATGTCATCC AATACTATGT TAGCGGCCCC AACTTTGGCG GGCTGTCGGG CGTAGTGTAT GCCGTCGCCG GTTACACTTG GGTCATGGGG ATCCGCAAAC CCGCAGCAGG AATAGGTTTA CCGCCCTCCT ACATGGGATT TATGTTGATT TGGCTGGTGT TAGGCTTTAC GGATTTCTTA GGCGTGTCAG TGGCGAATGG CGCCCATATT GGCGGATTAC TGATAGGTCT CGCCCAAGGC TGGTTCGATA GCCGCAGTAA AGTCACTCGC TAA
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Protein sequence | MIEIGRLPNS RAAQAFVDYL KGEQIDCQIQ PLPQGVAILV IRDQDAEKAR KEFAHFIAHP YDNKYLQASW EHGDTHTKLD YGAPSLQLFA QFITGAGPVT LIIFGLCVLI YAAMNLGFGG PVYETLSYFG AVPDTSVSQF WRVFTPSLMH FSAMHIIFNL LWWWYLGGKI ETRIGTAPLL ILLLVAGTLP NVIQYYVSGP NFGGLSGVVY AVAGYTWVMG IRKPAAGIGL PPSYMGFMLI WLVLGFTDFL GVSVANGAHI GGLLIGLAQG WFDSRSKVTR
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