Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3991 |
Symbol | |
ID | 4257849 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 4736602 |
End bp | 4737249 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638124680 |
Product | TetR family transcriptional regulator |
Protein accession | YP_740025 |
Protein GI | 114049475 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0546493 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACCC GCGACAAAAT CATCTATGCC AGCCTTGAGC TATTCAATGA GCACGGCGAA CGAAATATCA CCACCAATCA TATTGCCGCT CACCTGAATA TGAGTCCCGG GAATCTTTAT TATCACTTCC GTAATAAGGA AGACATTATC CGCTCGATCT TCAGTCTCTA CGAGGCGCAC CTAGAATCGG GATTCCAACC CTATGAAGGC GAGCAAGTCA ATGTTGAGCA ATTGATCGGC TATTTCGACG CGATGTTTTA TACCCTGTGG CAATTCCGTT TTATGTACGC CAATCTTGCC GATATTCTCG CCCGCGATGA AGAATTAAAA AGCCGTTATC TGCAGGCGCA GCAGCAAGTA TTAACGCGTT CGAGCCACGT GCTGGATAAA CTCAAGCAGG ATGGTTTTTT AAATATCGAC AATGACAAAA TCACCCAACT TGCCGACACC ATTAAGATGA TTGTGAGTTT TTGGATTGGT TATCAACTCA CCCAATCCAG CACTTCAACC ATCACTAAGG GCATTCTGTA CGAAGGTGTA CTGCGGGTAT TGATGATTTT TAAGGCCTAC GCCACGCCAA CATCTCAAGC GACCTTCAGC CGTTTAGAAC AGCACTACCA CGAGTTAGCG ACCCAAGATT CGCTCTAA
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Protein sequence | MKTRDKIIYA SLELFNEHGE RNITTNHIAA HLNMSPGNLY YHFRNKEDII RSIFSLYEAH LESGFQPYEG EQVNVEQLIG YFDAMFYTLW QFRFMYANLA DILARDEELK SRYLQAQQQV LTRSSHVLDK LKQDGFLNID NDKITQLADT IKMIVSFWIG YQLTQSSTST ITKGILYEGV LRVLMIFKAY ATPTSQATFS RLEQHYHELA TQDSL
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