| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3978 |
|---|
| Symbol | |
|---|
| ID | 4255983 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 4722429 |
|---|
| End bp | 4723658 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638124667 |
|---|
| Product | UDP-glucose/GDP-mannose dehydrogenase |
|---|
| Protein accession | YP_740012 |
|---|
| Protein GI | 114049462 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1004] Predicted UDP-glucose 6-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03026] nucleotide sugar dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.261644 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTATT CTATCTCAGC AGAAAATGCT AGTTTGGAAG ACAAAATGCC AAACCTTATA
AAACCTATGA ACATAGTTGT GGTTGGAATG GGCTATGTCG GCCTATCGAA TGCGGTTTTA
CTCGCACAGC AAAACCGTGT TACCGCTATT GATTTGATGC CCGAACGTAT CGAATTAGTC
AATGCGCGCA AAGCGACGGT TGCCGATAGC CTGATTGAAG AATATCTACA GCATAAAACC
TTAAATCTCA GTGCCACGAC CGATAAAAAC GTCGTTAAAA ATGCCGACTT TGTCATCATA
GCCACCCCTA CGGATTACGA CCCACAAACC AATTACTTTA ATACCCAATC GGTAGAAAAT
GTCGCGAAGG AAGTGCTCAC CCTGAATCCC GATACGACAA TTGTCATCAA ATCGACTGTG
CCCGTTGGTT TTACCGAGGG GCTGAGAAAT AAGCTCAACA GTGACAATAT CTTATTTTCA
CCCGAGTTCC TGCGTGAAGG TAAAGCGCTT TACGATAACC TGCACCCCTC GCGCATCATA
GTGGGTGAAC GCTCCGAGCG CGCTCAAGTC TTTGCCGATC TGCTTGCCCG CGCCGCAATC
AAGCAAGATA TTTCAATTTT ACTCACAGAC AGCACAGAGG CCGAGGCGAT TAAGTTGTTT
GCCAACACTT TTTTAGCCAT GCGCGTCGCC TACTTTAATG AGTTGGACAC CTATGCGGAG
AGTCGGGGAC TCAATACCCG TCAAATTATC GAAGGCGTAT GTTTAGATCC GCGCATCGGC
GATTACTATA ACAACCCTTC CTTCGGTTAT GGCGGTTACT GCCTGCCCAA GGACACTAAA
CAATTGCTGG CCAACTATAA TAATGTGCCT AACAATCTGA TCAGCGCCAT TGTCGATTCC
AACACCACCC GTAAAGATTT TATTGCCAAC GCCATTATCA GTAAGCAACC CAAACGGGTC
GGCATCTATC GTTTGATCAT GAAGTCCGAC TCGGATAACT TCCGCGCCTC GGCGGTACAA
GGTGTAATGA AACGCATTAA GGCCAAGGGC ATCGAAGTCG TGGTCTATGA GCCAGTACTC
AAGGAAGACG AGTTTTTTAA CTCGAAAGTG ATCCGCGATT TACACGAATT TAAAACCATG
TGCGACGTGA TTATTTCTAA TCGTATGGCC AGTGAACTCG AAGATGTCGC CGCTAAGGTG
TACACCCGGG ATCTGTTCCA TCACGACTAA
|
|---|
| Protein sequence | MTYSISAENA SLEDKMPNLI KPMNIVVVGM GYVGLSNAVL LAQQNRVTAI DLMPERIELV
NARKATVADS LIEEYLQHKT LNLSATTDKN VVKNADFVII ATPTDYDPQT NYFNTQSVEN
VAKEVLTLNP DTTIVIKSTV PVGFTEGLRN KLNSDNILFS PEFLREGKAL YDNLHPSRII
VGERSERAQV FADLLARAAI KQDISILLTD STEAEAIKLF ANTFLAMRVA YFNELDTYAE
SRGLNTRQII EGVCLDPRIG DYYNNPSFGY GGYCLPKDTK QLLANYNNVP NNLISAIVDS
NTTRKDFIAN AIISKQPKRV GIYRLIMKSD SDNFRASAVQ GVMKRIKAKG IEVVVYEPVL
KEDEFFNSKV IRDLHEFKTM CDVIISNRMA SELEDVAAKV YTRDLFHHD
|
|---|
| |