| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3975 |
|---|
| Symbol | |
|---|
| ID | 4255980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 4719131 |
|---|
| End bp | 4720855 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638124664 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_740009 |
|---|
| Protein GI | 114049459 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.778755 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCAT TGAATCGTCG TTTCAATAGC GAAGATTATT ACCAAGTACT CTGGCCGCTG
CTGTTGATGA GTTTGCTGAT CTTGCTGGTT GGCATAGGTT TTCGTTCCCC TTGGCCCGCC
GACGAGCCGC GGTTTGTTGA GGTCGCGCGG GAGATGGTTG CCTCGGGTCA ATGGTTATTC
CCTACCCGGG GCGGGGAATA TTATCCCGAT AAGCCGCCAG TATTTATGTG GGCGATTGCC
CTGTTTTATC AACTCACGGG GTCGTTAAAA CTCTCCTTTT TACTCCCCAA TGCTTTCTGC
GGCTTGTTGA CGGTATTCCT TGTCTATGAT CTGGGTGCCA GATTGTGGAA TGTGCGTGTT
GGCCGCAACG CTGCACTATT GCTCCTTATC GTGCCGCAGT TTTTAATGCA GGCGAAAAAT
GCCCAGATAG ATGCCATGGT GATGTGCTGG ATAACCGTGG GATGTTACGG ATTAATCAGA
CATTTTATGC TTGGGCCTAA GTGGCATTGG TATTTTATTG GCTGGGCATT TATGGGGCTT
GGGGTGATCA CTAAGGGGGT TGGTTTCTTG CCCCTGTTGT TGCTCATTCC GATTGGGATT
TACGCCTTCA AAGATAAGAC CCGTTTCGAG GGCCGCTTAA CTTGGCTTTG CCTGGCGGGG
CCTCTGGCCA TGCTGGCTGT GATTGCCTGT TGGTTAGTGC CTATGGTGAT GACGGTTCAA
GCCCATGGCA CGCCCGAGAT GGTGGCCTAT CAAAATAATA TTTTGTTTAA GCAAACGGGC
GAGCGTTATG TTAATGCTTG GCACCATATC AAGCCTTGGT ATTTCTTCGT GCTGAGTGTG
ATCCCTTGGA TGTGGTTCCC GATTTCGTTG CTGGTGGTCG CCTATTGGAA ACAGTGGGTG
CAAAAGGTAA AAGCCGATCC CACCATTGCG ATTCTGCTGA TTTGGGTCGG ACTCGTGGTG
CTGTTTTTCA GTATCAGCCC GGGCAAGCGC AACGTGTATA TTCTGCCCGC ATCACCTATG
TTGGCCCTCG CGGCGTCAGC GGTATTAACG GGTGTTTCAC CCAAAGCTTG GTTTGAAAAA
CTGGTCACTG GTGTGCTGTG GTTTTTGGGC GCGCTCGTGT TAGTGGCTGG CGTGCTGGCA
TTTATCCATC ACCCTGCACT TGTCAAAGCG CTGGCGGACT ATACCGATGA TCTCACTGGC
ATTGGTTACT TGTTTATTTT GCTCGGGGTG CTTTGGTGTG CCTTGCTGTG GCTGGCGCGC
CGTCAGTTTG CACTGGTGAA AGTGGGGTTA GTTTCCGCCT TGGGCTGGGT GCTGGTGAGC
ACTTGGGGTT ACGCTATGCT CGATGAAATG CGCACTCCCA GAAGCCTGAT GCTACACACT
GCCGAGGTGA TAGGTGAGGA TGCCGAACTT GGCTTAGTAA ACTTTAAAGA GCAATTTATT
CTGTTCTCGC CCATGAGTGT GACGCACTTT AGTTATCTTG CGCCAGTAGA AGAACAAGAG
CGTAATGCGT GGCAATGGAT GCAGGAGAAC AAACAGCGTT ATGTGTTAGT GCCTAGCGGT
GCCGAGCTGA GTTGTTTCGA TATCAAAGGC GGTAAGAGCA TGGGGATTGC CCACCGTGAC
GAATGGATTT TATTATCTGC GTCAGAGCTT AAGCCTCAGT GCGAAGCGCC AAAGCGTGAG
TACCGTTACT TTACCGACCA TCCAGGCCGT TGGTTAAAAG AGTAA
|
|---|
| Protein sequence | MDALNRRFNS EDYYQVLWPL LLMSLLILLV GIGFRSPWPA DEPRFVEVAR EMVASGQWLF
PTRGGEYYPD KPPVFMWAIA LFYQLTGSLK LSFLLPNAFC GLLTVFLVYD LGARLWNVRV
GRNAALLLLI VPQFLMQAKN AQIDAMVMCW ITVGCYGLIR HFMLGPKWHW YFIGWAFMGL
GVITKGVGFL PLLLLIPIGI YAFKDKTRFE GRLTWLCLAG PLAMLAVIAC WLVPMVMTVQ
AHGTPEMVAY QNNILFKQTG ERYVNAWHHI KPWYFFVLSV IPWMWFPISL LVVAYWKQWV
QKVKADPTIA ILLIWVGLVV LFFSISPGKR NVYILPASPM LALAASAVLT GVSPKAWFEK
LVTGVLWFLG ALVLVAGVLA FIHHPALVKA LADYTDDLTG IGYLFILLGV LWCALLWLAR
RQFALVKVGL VSALGWVLVS TWGYAMLDEM RTPRSLMLHT AEVIGEDAEL GLVNFKEQFI
LFSPMSVTHF SYLAPVEEQE RNAWQWMQEN KQRYVLVPSG AELSCFDIKG GKSMGIAHRD
EWILLSASEL KPQCEAPKRE YRYFTDHPGR WLKE
|
|---|
| |