| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3962 |
|---|
| Symbol | |
|---|
| ID | 4255967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 4705802 |
|---|
| End bp | 4706527 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638124651 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_739996 |
|---|
| Protein GI | 114049446 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0307 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGATCAT TTCTTGCGGC CTTGTGTTTT AGTTTATTGA GTCTGTGTGC CTACGCGACA
CCAGCTAAGC CCGTGGTGAT CCATCTGGTC ACGGCTTCGT GGCAGGGTTT CGCGGATCCC
GATGAGACGG GTTATTACTT TGATATCCTT CGCCGGGTGT TTCCGGCCCC CGATTGGCAA
CTCGATGTGC AGTTTATGCC CTTCGCCCGC ACGCTTTATC TGGTTGAAAC TAATAGAGTC
GATATGGTCC TCAGCGTCTA CAAAGGGGAT GTAAAAAACA GTTTGCTGAG TGAAAACCCC
GTTGAACTCG ATTCTATCGA TGCCGCTGTT ACCCCTCAAA TTTCCGCGAC TTGGTCGGGG
ATGGAGAGCC TATCCCATAA GAAAGTGCAA GCCATGCTGG CCTATCGCTA TAACATGCTG
ACGACCACTC CCATGTTTTA TGAGGAAGGC AGTGATATTT TAAACATGCT AAATAGTGTG
AATGCGGGGC GCACCGATGC TGTGCTGGAT TACAGAAAGA ATATCGAGGC TCTCGTCCCT
CAGTTGAAGG CGCCGCAGCA GTTTGTGATT ATTCAAGGGG TGTTAAAAGC CGAAACTTAT
TTCGCCTTTG CTAACACAGA AAAGGGGAGA ATGTTAAAAC AACATTTTGA TATTGAACAT
AAAAAACTGA TTGATTCCGG TGAGCAAGAT CGACTTTATG CAGAGACAAA AGCAAAGGGT
TTTTAG
|
|---|
| Protein sequence | MRSFLAALCF SLLSLCAYAT PAKPVVIHLV TASWQGFADP DETGYYFDIL RRVFPAPDWQ
LDVQFMPFAR TLYLVETNRV DMVLSVYKGD VKNSLLSENP VELDSIDAAV TPQISATWSG
MESLSHKKVQ AMLAYRYNML TTTPMFYEEG SDILNMLNSV NAGRTDAVLD YRKNIEALVP
QLKAPQQFVI IQGVLKAETY FAFANTEKGR MLKQHFDIEH KKLIDSGEQD RLYAETKAKG
F
|
|---|
| |