| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3956 |
|---|
| Symbol | |
|---|
| ID | 4255961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 4698463 |
|---|
| End bp | 4699200 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638124645 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_739990 |
|---|
| Protein GI | 114049440 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1571] Predicted DNA-binding protein containing a Zn-ribbon domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATT GGCTTATTTG TATCGACGAT ACCGACGACA TTGGCACTAA AGGCACGGGG
GAGATTGCCG AGGAAATTGC ACTCTTACTC GCGCAAACCT CGGGGGGCAC GGCTTCCTTT
GTTACGAGGC ACCAGTTATT TGTGCACCCT GACATTCCCT ACACCTCACA CAACAGTGCC
ATGTGTTTTG CGCTGCAGTC GCCATTATCG CAGGCGGAAA TCCATCGTCT GGCGGTGGCG
CATTTGGTGG CAGAATCGGC GCCTAAGGCA GATCCTGGGA TTGCGATTCT GGATGTCGAT
TCCGACTATG ATCTGAATGC GCTGATAGAC TTTGGGCTCA GCGCTAAGCG TGAGGTGATT
ACCAAAGCGG CCGCCTATCA GCTTGCCGAA CAGTTACAGA TCCAACTCAC CGAGCACGGT
GGCACAGGCC AAGGCGTGAT TGGAGCCTTG GCGGGATTAG GGCTGCGCTT AATGGGGAGC
GATGGTCGCG TAAAGGGTCA AATTAAACTC GGGCAACTTG AGGAGGCGTC CATCGAATTA
ACCGTGGCCG AGATTCTCGA GCAGACAGGC CTCGATGCGG TGATGAATAC AGATAAAACC
CGTTTAACCC CAGATGAAAA GATTCAACTC AAAGGCAAAG TGAAGGCCGT TTACCTTGAG
CATCAATTTG TATTGTTAGT CGCGAAGGAC GGTGAACTGT GGCGTAATGC GGGTAAGCAA
GCCCTGCAGG ATTATTGA
|
|---|
| Protein sequence | MKNWLICIDD TDDIGTKGTG EIAEEIALLL AQTSGGTASF VTRHQLFVHP DIPYTSHNSA
MCFALQSPLS QAEIHRLAVA HLVAESAPKA DPGIAILDVD SDYDLNALID FGLSAKREVI
TKAAAYQLAE QLQIQLTEHG GTGQGVIGAL AGLGLRLMGS DGRVKGQIKL GQLEEASIEL
TVAEILEQTG LDAVMNTDKT RLTPDEKIQL KGKVKAVYLE HQFVLLVAKD GELWRNAGKQ
ALQDY
|
|---|
| |