| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3909 |
|---|
| Symbol | |
|---|
| ID | 4257941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 4644011 |
|---|
| End bp | 4645375 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638124598 |
|---|
| Product | periplasmic sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_739943 |
|---|
| Protein GI | 114049393 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000571443 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.530607 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAGC GCGCGCTTGC CTGGCAGTTA TTAAACTCCC TCAAAACTCG GCTCGTCCTC
AGTGCGCTGC TGTTTATTTT GGTGCTGCTG CCGCTGATTG GGGTCGCCCT TAATGACGCC
TTTGCCGAGC AGGTAAAAAG TGCCGCTAAA AACGAGCTGA GTGCCTATGT GTATTCGGTG
TTAGCGGTGA CTGAGGTTGA AAACAAACGG ATTTTTATCC CCGAATTAGT GCTCGAAAAC
CGCTTTAACC TCATTCAATC AGGCCTCTAT GCCATTGCCA CCACAGAGGA TGCCGAGCAT
AAGCAGAATA TTGTCTGGCA TTCGCAGTCC TTTATTGGCA TCACGCCGCC GGCGCAGTTC
ACTATTCCGC CGACGGGCAA AAGTGCCTTC GCTCAAATCG ATCTCGCTGG CGCGCCGCAC
CTTATCTACA GCTTTAGCGT GAGTTTTGCC AGTCTGAATG AAAACGTGCC AGTCACTATC
CATATCATTA AGGATGAATT GGAGTTTCAA CAGCAAATCT CCCAATTTAA TCAACAACTT
TGGACTTGGT TGCTGATCTT GATCTTAGTG ATGCTGGTGT TTCAGTTAAG TTGGTTGATT
TGGACCATTA GGCCGCTGGC GCGCTTTACC CAAGAACTCC ACGATGTCGA ACAGGGTAAA
TCGACCCAAC TCAGTAGCCA GTATCCGACT GAGCTGCAGG AAGTCGCGCG GCAATTGAAT
ATCCTGCTCA ATACCGAACA GACCCAGCGC AAACGCTATC GCAATGCCCT TGCGGATTTG
GCCCACAGCC TGAAAACCCC ACTGGCGGTG ATTAAGAGTC AGGCAGACTT AAGCGAAGCC
TCAAGCGAGC AAGTGTCGAA TATCAGTCGT ATCATCAGCC ACCAGCTTAA ACGCGCCCAA
ACGGCGGCGG CCGCTTCCTG GCATTTAGGC ATTAAGGTGG AGGATGTCGC CGCCAAACTG
CTGCGAACCT TAGCCAAGAT TTATCGTGAG CCGCAGATAG ATCTCAGCGG CGATCTGGCA
CCACATGCCG TATTTAAGGG CGATGAGGCC GATCTGACCG AAATTTTAGG TAACTTGCTC
GATAATGCCT GCAAGGCCGC CAAGTCGCAG GTCAAATTAA CCATCACAGG CGATGCCTAT
CAGCTCCAAC TTTGTATCGA AGACGATGGT CCTGGGATCA GCGAAGCCCT GCAAACTCAA
ATATTTGAGC GTGGGATCCG CGCCGACTCT TATCACCAGG GCAACGGTAT AGGTTTAGCC
ATAGTGCGCG ATTTAGTGGA TAGCTATAAT GGCCGCATTT CCGTATCCCG TTCAGAAAAC
TTAGGCGGCG CCAAGTTTAC GGTTAACTTC ACCCACTCGG CTTAA
|
|---|
| Protein sequence | MSKRALAWQL LNSLKTRLVL SALLFILVLL PLIGVALNDA FAEQVKSAAK NELSAYVYSV
LAVTEVENKR IFIPELVLEN RFNLIQSGLY AIATTEDAEH KQNIVWHSQS FIGITPPAQF
TIPPTGKSAF AQIDLAGAPH LIYSFSVSFA SLNENVPVTI HIIKDELEFQ QQISQFNQQL
WTWLLILILV MLVFQLSWLI WTIRPLARFT QELHDVEQGK STQLSSQYPT ELQEVARQLN
ILLNTEQTQR KRYRNALADL AHSLKTPLAV IKSQADLSEA SSEQVSNISR IISHQLKRAQ
TAAAASWHLG IKVEDVAAKL LRTLAKIYRE PQIDLSGDLA PHAVFKGDEA DLTEILGNLL
DNACKAAKSQ VKLTITGDAY QLQLCIEDDG PGISEALQTQ IFERGIRADS YHQGNGIGLA
IVRDLVDSYN GRISVSRSEN LGGAKFTVNF THSA
|
|---|
| |