| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3902 |
|---|
| Symbol | ompR |
|---|
| ID | 4257934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 4636774 |
|---|
| End bp | 4637499 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 638124591 |
|---|
| Product | osmolarity response regulator |
|---|
| Protein accession | YP_739936 |
|---|
| Protein GI | 114049386 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.140952 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACAAG AAACCTCGAA AATCCTCGTC GTCGATGATG ATATGCGCCT ACGAGCACTA
CTCGAGCGTT ACCTGATGGA GCAAGGCTAT CAGGTACGCA GTGCGGCCAA TGCCGAGCAG
ATGGACCGTT TATTGGAGCG TGAAAACTTC CACCTAATTG TGCTCGATCT GATGCTCCCC
GGAGAAGATG GCTTATCCAT CTGCCGTCGC CTGCGCCAAC AGGGCAGCAC CATTCCCATT
GTGATGCTGA CCGCTAAGGG CGATGAGGTC GACCGGATTA TCGGCTTAGA ATTGGGTGCC
GATGACTATC TACCGAAACC CTTTAACCCC AGAGAATTAT TAGCACGGAT CAAAGCCGTC
ATGCGCCGCC AAGTGCAGGA TGTGCCCGGT GCACCAGCGC AGCAAGAAGC CGAAATTACC
TTTGGAGAGT TTTCCCTCGA CCTAGCCACC CGTGAGATGT ACCACGGTGA TGAGGCCATC
ACACTCACCA GTGGCGAGTT TGCCGTATTA AAAGTGTTAG TCACCCATCC ACGCGAACCT
TTATCGCGGG ATAAACTGAT GAACCTCGCC CGTGGCCGTG ATTATTCGGC GCTGGAGCGC
TCGATTGACG TACAGGTCTC GCGCCTGCGC CGTTTAATTG AGAAGGATCC CGCCAACCCA
AGGTATATCC AAACCGTGTG GGGCCTTGGC TATGTGTTTG TGCCCGACGG CGCCGCCCGT
CGATGA
|
|---|
| Protein sequence | MGQETSKILV VDDDMRLRAL LERYLMEQGY QVRSAANAEQ MDRLLERENF HLIVLDLMLP
GEDGLSICRR LRQQGSTIPI VMLTAKGDEV DRIIGLELGA DDYLPKPFNP RELLARIKAV
MRRQVQDVPG APAQQEAEIT FGEFSLDLAT REMYHGDEAI TLTSGEFAVL KVLVTHPREP
LSRDKLMNLA RGRDYSALER SIDVQVSRLR RLIEKDPANP RYIQTVWGLG YVFVPDGAAR
R
|
|---|
| |