Gene Shewmr7_3862 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3862 
Symbol 
ID4254806 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp4587015 
End bp4587635 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content48% 
IMG OID638124551 
ProductLexA repressor 
Protein accessionYP_739896 
Protein GI114049346 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACCGT TGACGCCACG CCAAGCCGAA ATTTTAGAGC TGATTAAACG TAATATTGCC 
GAGACTGGCA TGCCACCCAC TCGGGCCGAA ATTGCCACCC GTTTAGGTTT TAAAAGTGCA
AATGCCGCCG AAGAACATCT AAAAGCATTG GCAAAAAAAG GCTGCATCGA GATCATGCCT
GGCACTTCCC GTGGTATTCG CCTCCCCGTT GAGGAAGAAG ATAACAGCGA AACAGGCCTG
CCATTAATTG GCCAAGTGGC TGCGGGCGAG CCAATTCTCG CCCAAGAGCA TGTCGAACAG
TATTACCAAG TCGATCCCAG CATGTTCCAC CCCTCTGCCG ATTTCTTACT GCGCGTAAAA
GGTGACAGTA TGAAGAACAT AGGTATCCTC GAAGGGGATC TGCTCGCCGT CCATAAAGTA
CAGCAAGCTC GTAATGGTCA AGTGGTCGTT GCCCGCGTTG ATGATGATGT AACAGTTAAA
CGCTTTGAAA AAAAAGGGAA TCTAGTCTAC CTGCATGCAG AGAATGAAGA TTATTCCCCG
ATTAAAGTCG ATTTAAGCTT CCAAAGTCTA ACAATTGAAG GGCTCGCCGT AGGGGTGATC
CGTAATGGAG ATTGGCTATG A
 
Protein sequence
MRPLTPRQAE ILELIKRNIA ETGMPPTRAE IATRLGFKSA NAAEEHLKAL AKKGCIEIMP 
GTSRGIRLPV EEEDNSETGL PLIGQVAAGE PILAQEHVEQ YYQVDPSMFH PSADFLLRVK
GDSMKNIGIL EGDLLAVHKV QQARNGQVVV ARVDDDVTVK RFEKKGNLVY LHAENEDYSP
IKVDLSFQSL TIEGLAVGVI RNGDWL