Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3844 |
Symbol | |
ID | 4254788 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 4565282 |
End bp | 4566139 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638124533 |
Product | RNA polymerase factor sigma-32 |
Protein accession | YP_739878 |
Protein GI | 114049328 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000172859 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCTTTC AAACGCAATC AATGGCACTA ACAGTCCCTC AGGGCAGCAG TAGTTTAGAG GCTTATATCC ATTCAGTGAC TAGCATGACA ATGTTAGACG CTGAGACTGA GTATGAGTTA GCCAAGCGTT TGCAGGAAAC GGGTGATCTG CAAGCGGCGA AGCAACTGAT TATGTCGCAC TTACGTTTTG TGGTGCACGT TGCTAAGGGC TACTCAGGTT ACGGTCTGCC ACAGGCGGAT TTGATCCAAG AAGGCAACAT CGGTCTGATG AAAGCGGTTA AGCGCTTCGA TCCCGATGTG GGTGTCCGTC TAGTGTCTTT TGCAGTGCAC TGGATTAAAG CCGAAATTCA CGAATATGTG CTGAAAAACT GGCGCATTGT TAAAGTCGCA ACCACCAAAG CACAACGTAA GTTGTTCTTT AATATCCGTA AAGCGAAAAC TCGCCTCGGT TGGTTTAGCG ATGATGAAGT CGCAATGGTG GCAGAAAACT TAGGTGTATC TAAGGCCGAT GTGACTGAGA TGGAATCACG TATGGCGGCG CAGGATCCTG CGTTTGACCT CAGCAGTGAT AACGATGATG AGCAGGACTT TGCCCCTGTG CATTATCTCG AAGATCATTC GTCGGATTTA GCCGAAAACA TCGAAAACGA TAACTGGGAA TCCAATGCCC AAGGTCGTTT ATTATCGGCC ATCAAAACCT TAGACGAGCG TAGCCAGCAT ATTCTGCGTG CCCGTTGGTT AGACGATGAT AAAACCACAC TGCAGGAATT GGCAGAAACC TATCAAGTCT CGGCTGAGCG CATTCGCCAG TTAGAGAAAA ACGCCATGAA CAAGCTTAAG GCTTGTATGG AAGCCTAA
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Protein sequence | MTFQTQSMAL TVPQGSSSLE AYIHSVTSMT MLDAETEYEL AKRLQETGDL QAAKQLIMSH LRFVVHVAKG YSGYGLPQAD LIQEGNIGLM KAVKRFDPDV GVRLVSFAVH WIKAEIHEYV LKNWRIVKVA TTKAQRKLFF NIRKAKTRLG WFSDDEVAMV AENLGVSKAD VTEMESRMAA QDPAFDLSSD NDDEQDFAPV HYLEDHSSDL AENIENDNWE SNAQGRLLSA IKTLDERSQH ILRARWLDDD KTTLQELAET YQVSAERIRQ LEKNAMNKLK ACMEA
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