| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3821 |
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| Symbol | |
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| ID | 4256808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 4539966 |
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| End bp | 4542086 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638124510 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_739855 |
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| Protein GI | 114049305 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGAT GGCAACACTT GCTCAATAAA CTCAGTACAG ATGACCCGGT ACTGCAAGAT
AAGCTGTCAC GCTGGCAAGA CAGTCCCCAC CTGACACCCC TCGCCTTGAT CCAAGGCTTT
AGTTTTATTA GTGCAAATAA CGCCACCCTC GATTACTTTG GTACCGAATA CGATGCCTTA
GTGAATACCA CGCCCTATGA CTTTTCACCT AGGATCCAAT CCTCCGGACG CAATAGCGTT
GAATTTGCAC GTGAAATGAT TTTTGAGGCG GCATCGGGGA ACCATGTCGA ATTTAGTTGG
CTCCACCTGA GCCAACAGGG TAAAGAACTC CCCACCAAGG TAAGACTCTA CCCTTGTTAT
TTACAGCAAC AAGCCGTAGT GCTCGTTGAG CTACAAGCCC TCAACCGTCG AACTCAAGTT
CGGCCGTCGA TCTCCGATGG CTTTGCCCAT ATCCCACGGG AGATTATGGC GACCACACTT
GAAGAGAGTG CCGAAGCCGT ATATATCACC GATGCAGGCA ATCACATATT GGCCGTAAAC
AAGGCTATGT GCCGTATCTG CGGTTACAGT GCCGAACAAT TGATCGGTAA AACCCCTGAG
TTTTTAGAGG CCAAACTCCT GCCACCAGGG CAAGAAACCG ATTGCCAAGC CGCCATGAAA
CTTCGGGGAT TTTGGCATGG TGAAACACTT AAACAGCGTT CTGACGGGAG TCACTTTCCC
GCTTGGCTGA GCAGTCGCCG AATCGAGACC GATGATAATG CCCTGTATCA TGTAAATATT
TTCAGCGATA TCAGCACCAA AAAACTGCTC GAAACGCAGC TCACCACCCG TGCTATGTAC
GACACATTAA CGGGGTTGCC GAACCGTTAT CATCTCAAGC AAATACTCAA TAGCGCCCTC
GACAAACTGA AGGATGATCC TTCCACCCTC GGCGCACTGA TGTTTTTAGA CCTCAATGGT
TTTAAGAACA TCAATGACAG CTTTGGCCAT TCCATGGGTG ACAGGGTGTT ACAACTGGTG
GCCGCGCGTT TAGAAGCGGG CTGCATTGAG AAGGCCGATA TCGCCCGAAT GGGGGGCGAT
GAGTTTACCT TAGTGCAGCA GGAATGCAGC TGTAAGGAAG AAATTCAATT ATTTGCCGAG
CAAATACTGA GTCTGTTCGA CAGTCCATTT GAAATCGAAG GGCAAAAGTT CTTCCTCGGT
ACCAGCATTG GTATCGCACT TTTCCCCACT CATAGTGATC AAGCTGGTCA ACTGATTAGT
TTGGCCGATA CCGCTATGTA TAGCGCGAAG AAAAACCAGC CGCACTTAGT GTTTTATGAT
AAGGCGATGA GCCAGGCTGC CGAGCTTAAA TTAAAGCTTA TCAACAATCT AAGGCATGCC
CATAGCCTCA AGCAGTTCAA TCTTGCCTAT CAGGCAATTG TGGATTTACA CACCAATAAG
CCCATAGGTG CCGAGGCGCT GTTACGCTGG CATAAATCTC CAAGTGAGCA TTTTGAAGCG
GCCGAGTTCG TCCCTTTACT CGAGGAAACA GGGCTGATTA TTACCATTGG ACAATGGGCA
TTGGAGCAGG CTTGTAAACA GGCCACAATA TGGCGCGCAA GTTATCAGCC CGATTTTAAG
GTATCGGTCA ATGTGTCTCC CTTACAACTA GAGCATGTGG ATTTTGTCGG CCAAGTGATT
AGCGCCCTAG AAATGGTCGC TCTGCCCGCC GAAGCGCTGA TTTTAGAAAT CACCGAGTCT
GCGCTTTTAC GCCAACCCGA ACAAGCCCGC CAAACCCTTG AGCGCATCAA GGCCTTAGGT
GTAGGCATCG CGATTGACGA CTTTGGCACA GGTCTCTCAT CACTCAGCCG TTTAGGAACC
TTACCGATAG ACAGTGTCAA AATTGATGCT GAATTTGCCC TGCGTTTACA TGATGCTTCG
GGAAAAAAGC TTTGCCATGC GATAGTGCAA TTAGCGCAGG CTCTCGACAT TCACTTTGTG
GCAGAAGGCA TTGAAACACA GCAACAAAAA GACATTATTA CCCATATGGG ACAAGGTTTT
GCGCAAGGCT TCTTGTTTGG CTATCCCAGT TCGGTTGAGC AGTTTACCCA AGCCTTTTTA
GCCGAAAGGT GTATCGCTTA A
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| Protein sequence | MIRWQHLLNK LSTDDPVLQD KLSRWQDSPH LTPLALIQGF SFISANNATL DYFGTEYDAL
VNTTPYDFSP RIQSSGRNSV EFAREMIFEA ASGNHVEFSW LHLSQQGKEL PTKVRLYPCY
LQQQAVVLVE LQALNRRTQV RPSISDGFAH IPREIMATTL EESAEAVYIT DAGNHILAVN
KAMCRICGYS AEQLIGKTPE FLEAKLLPPG QETDCQAAMK LRGFWHGETL KQRSDGSHFP
AWLSSRRIET DDNALYHVNI FSDISTKKLL ETQLTTRAMY DTLTGLPNRY HLKQILNSAL
DKLKDDPSTL GALMFLDLNG FKNINDSFGH SMGDRVLQLV AARLEAGCIE KADIARMGGD
EFTLVQQECS CKEEIQLFAE QILSLFDSPF EIEGQKFFLG TSIGIALFPT HSDQAGQLIS
LADTAMYSAK KNQPHLVFYD KAMSQAAELK LKLINNLRHA HSLKQFNLAY QAIVDLHTNK
PIGAEALLRW HKSPSEHFEA AEFVPLLEET GLIITIGQWA LEQACKQATI WRASYQPDFK
VSVNVSPLQL EHVDFVGQVI SALEMVALPA EALILEITES ALLRQPEQAR QTLERIKALG
VGIAIDDFGT GLSSLSRLGT LPIDSVKIDA EFALRLHDAS GKKLCHAIVQ LAQALDIHFV
AEGIETQQQK DIITHMGQGF AQGFLFGYPS SVEQFTQAFL AERCIA
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