| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3718 |
|---|
| Symbol | |
|---|
| ID | 4254858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 4423730 |
|---|
| End bp | 4425541 |
|---|
| Gene Length | 1812 bp |
|---|
| Protein Length | 603 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638124406 |
|---|
| Product | GTP-binding protein TypA |
|---|
| Protein accession | YP_739755 |
|---|
| Protein GI | 114049205 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU
[TIGR01394] GTP-binding protein TypA/BipA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0253074 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTAGAGA ATTTACGTAA CATCGCCATT ATTGCGCACG TTGACCATGG CAAAACGACC
CTGGTTGACA AGCTGCTGTC GCAATCAGGA ACCCTTGCAA CCCGGGGAGA AGCTACTGAG
CGGGTGATGG ACTCCAACGA TCTTGAAAAG GAGCGTGGGA TCACGATTCT GGCAAAGAAT
ACTGCCATCA AGTGGAATGA CTACCGCATT AACATCGTAG ACACCCCAGG CCACGCCGAC
TTCGGTGGTG AGGTTGAGCG CGTATTGTCT ATGGTGGACT CAGTATTACT GCTGGTTGAC
GCCGTTGACG GTCCAATGCC ACAGACTCGC TTCGTAACCA AGAAAGCGTT CGCTCAAGGT
TTAAAGCCAA TCGTTGTGAT CAACAAGATT GACCGTCCTG GTGCTCGCCC TGATTGGGTT
ATCGACCAAG TATTCGACTT GTTCGACAAC TTAGGCGCGA CCGATGAGCA ATTAGATTTC
CCAATCGTTT ATGCCTCGGC ATTAAACGGT TTTGCAACTT TAGATCCGGA TGAAGTGAGC
GCAGATATGA CGCCACTGTT CCAAACTATC GTTGAAAAAG TTTCTCCACC TGCAGCTGAC
GCTGAAGGTC CATTCCAGAT GCAAATTTCT CAGCTCGATT ACAACTCTTA TGTGGGTGTT
ATCGGCGTGG GTCGCATCAA GCGTGGTAGC ATCAAAGCAA ACCAACAGGT GAGCGTGATT
GGTGCCGACG GTAAAGTGCG TAACGGCAAA ATGGGCCAAG TATTAGGTTA CATGGGCTTA
GATCGTACCG AAGTTGACGT AGCTAACGCT GGCGACATCG TTGCTATTAC CGGTTTAGGC
GAGCTGAAAA TCTCTGATAC TGTGTGTGCT GCCGGTAGCG TTGAAGCACT GCCTGCACTG
TCAGTTGATG AGCCAACGCT GACCATGACT TTCCAAGTCA ACACTTCACC TTTCGCAGGT
AAAGAAGGTA AGTACGTGAC TTCACGTAAC ATTCTTGAGC GTCTGCAACA GGAATTAGTG
CACAACGTGG CACTGCGTGT TGAAGAAACC GACAGCCCAG ACCGTTTCGC GGTATCTGGC
CGTGGTGAAT TACACTTATC TATCCTGATC GAAAACATGC GTCGTGAAGG TTACGAATTA
GCGGTTTCTC GCCCAGAAGT TATCTTAAAA ACCATCGATG GCGAACTGTG TGAGCCATAC
GAAACTCTGA CCGTTGACGT TGAAGAAGAA CATCAAGGTA CAGTGATTGA GAAACTGGGT
ATCCGTAAAG CCGAAATGAA AGACATGCAG CTTGACGGTA AAGGTCGCGT TCGCGTTGAC
TTTATCATCC CAAGCCGTGG CTTAATCGGT TTCCAAACTG AGTTCTTAAC TGCAACTTCT
GGTACGGGTC TGATTTACCA CTCATTCGAT CACTACGGTC CACACAAAGG TGGCGATATC
GGTCAACGCG CTAACGGCGT ACTGATCTCT AACGCGACCG GTAAGGCGCT GACATTCGCA
CTGTTCGGTC TACAGGATCG CGGTCGTCTG TTTATTGGCC ATGCTGCCGA AGTTTACGAA
GGTCAAGTTG TGGGTATCCA CTCACGTTCG AACGACCTGA CAGTTAACTG TCTGAAAGGT
AAGCAGCTGA CCAACATGCG TGCTTCTGGT ACTGACGAAG CTCAAGTACT GACTACGCCA
ATCACTTTAA CTCTTGAGCA AGCACTTGAG TTTATCGATG ATGACGAATT AGTAGAAGTA
ACGCCTAAGA GCATCCGTGT TCGTAAGAAA CATTTAACTG AAAACGACCG TAAACGCGCT
AGCCGTGGTT AA
|
|---|
| Protein sequence | MLENLRNIAI IAHVDHGKTT LVDKLLSQSG TLATRGEATE RVMDSNDLEK ERGITILAKN
TAIKWNDYRI NIVDTPGHAD FGGEVERVLS MVDSVLLLVD AVDGPMPQTR FVTKKAFAQG
LKPIVVINKI DRPGARPDWV IDQVFDLFDN LGATDEQLDF PIVYASALNG FATLDPDEVS
ADMTPLFQTI VEKVSPPAAD AEGPFQMQIS QLDYNSYVGV IGVGRIKRGS IKANQQVSVI
GADGKVRNGK MGQVLGYMGL DRTEVDVANA GDIVAITGLG ELKISDTVCA AGSVEALPAL
SVDEPTLTMT FQVNTSPFAG KEGKYVTSRN ILERLQQELV HNVALRVEET DSPDRFAVSG
RGELHLSILI ENMRREGYEL AVSRPEVILK TIDGELCEPY ETLTVDVEEE HQGTVIEKLG
IRKAEMKDMQ LDGKGRVRVD FIIPSRGLIG FQTEFLTATS GTGLIYHSFD HYGPHKGGDI
GQRANGVLIS NATGKALTFA LFGLQDRGRL FIGHAAEVYE GQVVGIHSRS NDLTVNCLKG
KQLTNMRASG TDEAQVLTTP ITLTLEQALE FIDDDELVEV TPKSIRVRKK HLTENDRKRA
SRG
|
|---|
| |