| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3661 |
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| Symbol | |
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| ID | 4256159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 4358937 |
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| End bp | 4360610 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638124349 |
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| Product | threonine dehydratase |
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| Protein accession | YP_739698 |
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| Protein GI | 114049148 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form
[TIGR01127] threonine dehydratase, medium form |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTATCTC TCGCATCGTC GCAAACGGAG CAGGCTGAGG CCCAGTCCTC TCAAGTTCAA
TCCTCTCAAG TTCAGTCCGA TAAGGCGCAA TCGGGCACTT CAGCCTTAGA AAAGAGTCAG
CTTGCGCAAA GCTACCTGCA AAAAATCCTG TTGTCGTCGG TTTATGACGT TGCGAAAGTG
ACGCCACTCT CGAGCCTTAA TAAACTCTCG GCGCGTTTGG GCTGCCAAGT ATTTTTAAAG
CGTGAGGATA TGCAGCCTGT GCATTCCTTC AAGCTGCGCG GCGCCTATAA CCGTATCGCC
CAGTTAAGCC AAGCCGAATG TCAACGCGGC GTGGTGTGTG CCTCGGCGGG CAACCATGCC
CAAGGCGTGG CCATGTCGGC GGCCAGTCGT GGTGTGGATG CAGTGATTGT GATGCCCGAA
ACTACCCCGG ATATTAAAGT CGATGCGGTG CGTCGTTTGG GTGGCAACGT AGTGTTGCAC
GGCCAAGCCT TCGATCAGGC CAATGGCTTT GCGATGGAGA TGGCCGAGCA GGAGGGGCGG
GTGTATATCG CCCCCTTTGA TGACGAAGCC GTTATCGCAG GCCAAGGCAC TATCGCCCAA
GAAATGCTGC AACAGCAGCG CGACCTTGAA GTGGTATTTG TACCCGTGGG CGGTGGTGGC
TTAATTGCCG GGATTGCTGC CTATTACAAG GCGGTGATGC CACAGGTCAA AATTGTTGGG
GTGGAGCCTG AAGATGCGGC CTGCTTAAAA GCGGCGATGG AGGCGGGCGA GCCTGTCACA
CTCCCGCAGG TCGGCTTGTT TGCCGATGGA GTGGCGGTTA AACGTATCGG CACTGAGCCA
TTTCGCCTAG CTAAGTGGTT TGTGGATGAA GTGGTGACGG TAACGTCCGA CGAAATCTGC
GCCGCCGTTA AAGATATTTT TGAGGATACC CGCGCCATTG CCGAACCTGC TGGTGCCTTA
TCCCTTGCTG GGCTTAAAAA ATATGTCAGC ACCAATGCCG CAGGCGAGAG TGGTAAGGGT
GAAAAAGTCG CAGCGATTTT AAGTGGCGCG AATGTGAACT TCCACAGCCT ACGGTATGTG
TCGGAGCGTT GCGAGTTGGG TGAGCAAAAA GAAGCTGTGT TGGCGGTTAA AGTGCCCGAG
CGTCCCGGCA GCTTCCTGCG TTTTTGTGAG TTGCTCGAAA AGCGGGTGAT GACCGAATTT
AACTATCGCT TTAGTAGCCG CGATATGGCG GTGGTGTTTG CGGGTATTCG TTTGACCAAA
GGCCATGGCG AATTAGAGCA GATCATCAAT ACCTTAGAAG ATAATGGCTT CGAGGTGCAG
GACTTATCCG GTGACGAAAC CGCGAAATTG CATGTGCGTT ATATGGTCGG TGGTCATCCG
CCAGAGCCGT TAGAGGAGCG CCTATTTAGC TTCGAGTTTC CCGAGCATCC AGGGGCGCTG
CTGAAGTTTT TAACCACCCT GCAAAGTAAG TGGAATATCA GTTTATTCCA TTACCGTAAT
CACGGCGCGG CCTTTGGGCG AGTGCTGGCG GGGTTTGAAG TCCCCGAGGG CGATGCCTTG
CCGTTTCAGC AGTTTTTAAC TGAGCTGGGA TTTGTCTATC AAGAAGAGAC GCAAAGCCCT
GCTTATCAGC TGTTTTTGAA TGCCGGAAAA GGAAAAAAGA ACCTGCCTTT GTAA
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| Protein sequence | MLSLASSQTE QAEAQSSQVQ SSQVQSDKAQ SGTSALEKSQ LAQSYLQKIL LSSVYDVAKV
TPLSSLNKLS ARLGCQVFLK REDMQPVHSF KLRGAYNRIA QLSQAECQRG VVCASAGNHA
QGVAMSAASR GVDAVIVMPE TTPDIKVDAV RRLGGNVVLH GQAFDQANGF AMEMAEQEGR
VYIAPFDDEA VIAGQGTIAQ EMLQQQRDLE VVFVPVGGGG LIAGIAAYYK AVMPQVKIVG
VEPEDAACLK AAMEAGEPVT LPQVGLFADG VAVKRIGTEP FRLAKWFVDE VVTVTSDEIC
AAVKDIFEDT RAIAEPAGAL SLAGLKKYVS TNAAGESGKG EKVAAILSGA NVNFHSLRYV
SERCELGEQK EAVLAVKVPE RPGSFLRFCE LLEKRVMTEF NYRFSSRDMA VVFAGIRLTK
GHGELEQIIN TLEDNGFEVQ DLSGDETAKL HVRYMVGGHP PEPLEERLFS FEFPEHPGAL
LKFLTTLQSK WNISLFHYRN HGAAFGRVLA GFEVPEGDAL PFQQFLTELG FVYQEETQSP
AYQLFLNAGK GKKNLPL
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