| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3649 |
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| Symbol | |
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| ID | 4256147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 4345630 |
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| End bp | 4348260 |
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| Gene Length | 2631 bp |
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| Protein Length | 876 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638124337 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_739686 |
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| Protein GI | 114049136 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.02582 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAGGG ATGAAGATGG AACTACCCCG CCTCGAGCTC ATGAGGTTGA ACGCTTAAAA
AAGAGACTTA ATCGCCTCAA ATATTTGGCG CATAAGTATA AGCGTGCCGA AGTCGTTCAA
AATGCGTTAC TCGAATTATC CCATATTGCG ACTCAGGTTC CTTCCCTCGA AGAGTTCTAT
CTAGGTGTGC ATCACCACCT AAAGCAACTG ATCTCTGCCG ATAATTTTTT TATTGCCACT
CTCGATGTGA ATAGCGGGGA CATTTCGGTT CCCTTCTTCG CCGATGAAAA AGACGCCCAC
CCCGCCCAAC TCTATCCCGA GCAATCGCTA TCCACCCTGC TACAACAGGG CTTAACGGGC
TATGTCTTTC GCACTGGCGA AACCGTATTG TGCGATGAGG CTAAGGTTGA CGAACTGGTT
CAAGCGGGCG AAATAGTCAA TCTCGGCTCG CCTTGTCACC TATGGCTAGG CGTCCCCATA
AAACATGAAG GCATAGTGAC CGCGGTACTC GTAGTGCAAA CCTATGATAC CAATGTGAGT
TACGGCGATA TCGAGGTCGA GTTAATGACC TTTATTTGCC ATCACATTGC CGGCGTGATG
GAAAGGCTTA AACATCAAGA ACAACTAGAA CAAGCCATTC AACAACGCAC CAAGGAACTC
AGCCAAGCCT ACGATAAACT CAAGCAAGAA GTGTACGAGC GCCGCAGAGC CGAGCGGTTG
CAAAAGTCGT TATTTGAGAT TGCTGAGCTT GCAAGCTCAG GCTCGGATAA CCCTGACTTC
TATGCCCAGC TGCATAATGT GATTCGCCAT CTTATCCCCG CCAATAACTG TTATATCGCC
CTGCTTAATG AAGAAGGCAC TCACTTAACC TTCCCGTTTT ACGTGTCACA ATTAGGTAAT
CAACATCCAG GTTCAAGGCC CTTGCAGGAT GGGTTGACCG AGTATGTGCT TAAGCATAAG
CGCCCATTAT TACTCGACCA ACATGATATC AATGACTTAA TCACCTCTGG CGAACTTTAC
GCTAAAGCCC CCGCACTAAA CCACACCCAA ACAATGCACC AATGGATAGG TATTCCACTG
TTTATCCATG ATGAAGTGCG TGGCGCCTTG ACCATTTACA GCTTCAGCAT GACCCAAAAC
TACCAAACTA AAGATTTGGA ATTGCTGACT TTTGTGTCCC AGCATATCGG TGCGGCCATC
GAGAAAAAGC TAACCGCAGA ATCTTTGCGC CGTAGCTATG AAGAATTAGA AGAAAAAGTC
GCGGCACGCA CCACGGCTCT TGCCGAGTTG AATAAGGATC TTGAAAAAGA AATCCGCCAA
CGCCGCAATA TGGAAGCCAA GCTCGTCCAT GATGCCAAGC ACGATGCGCT CACAGGGTTG
CCGAATCGCG CCATGTTTAT GGAGCGACTC AATCAAGCCA TAAAGCACGT GCGGCGCCAT
ACCCTAGAGC AGTTTGCCCT GCTCTTTATC GACCTCGACC GCTTCAAGCA AATTAACGAC
ACTATGGGAC ATTTAGAGGG GGATAGGTTC TTAATTGAAA CCGCCACCCG CCTACGCGCC
TGTATTCGCA GTAACGATAC CTTAGCCAGA CTCGGTGGCG ATGAATTTGT TATCCTGCTC
GATAGCATTA ATGGTATTAA CGATGCCCGT GATGTTGCCG AGCGGGTGAT TCAAAAAATC
TCACTCTCCT ATACCTTAGG GGCAATCGAG TTTCATTCGG GCGCCAGTAT TGGCATCACC
ATCAGCGGCA ATAAGCTAGA TACCAGTGAA TCCATGCTGC GCAATGCCGA CACTGCCATG
TACCAAGCCA AGGCGAATGG CAAGGGCTGT TATGTCATCT TCGACGATAG CGCCTCTCAG
CAAAAGATGC AGGACATTGC CTTCGAAAAT GATTTTAAGC AGGCTTTACA AACCGGTGAG
TTACAACTGC AGTTTTGGCC GATTGTCGAT TTACTGACAC TACAAACCCA AGCTTTAGAA
TGCCGTTTGA CCTGGGAGCA TCCACAGTGG GGCACCATTC CACAGGAGAT CCTCAGCCAG
TTAGCCGAAC AAGCGAACCT GATGGTCGAA CTGGATAAGT ATACGATTAG CTTGCTGGAT
AAGAGCTATC ATCAACTACT TGCCAACCAA GGCGATAAAG TTGAATTACA CCTTATGCTG
TCGAGCCAAC ATCTAAAGCA TAAGCACGCG CTGCGTGGAC TCAAAAACGC CCTAAAGCAG
ACTAAGCTTG CGCTGCCACA GCTATGGCTG TTTTTTAATG AAAAGGCCTT AGTGCTGGAA
ACAGAGAATC ACATTAATGG CTTTGAGTTG TTGAAAAAGC TGGACGTGAA CTTGGGGATC
AGCCACTACG GCAGTGGCCA CAGCTCATTA AATAGTTTGT TATTCTTACC CATCAAGGGC
TTAAAGCTCG ATGCCAACAT CACCAAACAA TTGCAGGATG AGCAACACAT TAAGCTGATG
TCGGCTTACC AGAAAGCGGC CTCGACCTTA GACTTACAAA CCTTTGTCGA CGGCCTACAA
TCCGTCGAGC AGATAAAAAT CTTCCACGCA TTAGGTTATC GCTTTGGCCA AGGCGGTGCC
TTAGCCTCAC CTTTTTTATT GTCAGACACC ACACAACAGG TCTGTGCCTG A
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| Protein sequence | MFRDEDGTTP PRAHEVERLK KRLNRLKYLA HKYKRAEVVQ NALLELSHIA TQVPSLEEFY
LGVHHHLKQL ISADNFFIAT LDVNSGDISV PFFADEKDAH PAQLYPEQSL STLLQQGLTG
YVFRTGETVL CDEAKVDELV QAGEIVNLGS PCHLWLGVPI KHEGIVTAVL VVQTYDTNVS
YGDIEVELMT FICHHIAGVM ERLKHQEQLE QAIQQRTKEL SQAYDKLKQE VYERRRAERL
QKSLFEIAEL ASSGSDNPDF YAQLHNVIRH LIPANNCYIA LLNEEGTHLT FPFYVSQLGN
QHPGSRPLQD GLTEYVLKHK RPLLLDQHDI NDLITSGELY AKAPALNHTQ TMHQWIGIPL
FIHDEVRGAL TIYSFSMTQN YQTKDLELLT FVSQHIGAAI EKKLTAESLR RSYEELEEKV
AARTTALAEL NKDLEKEIRQ RRNMEAKLVH DAKHDALTGL PNRAMFMERL NQAIKHVRRH
TLEQFALLFI DLDRFKQIND TMGHLEGDRF LIETATRLRA CIRSNDTLAR LGGDEFVILL
DSINGINDAR DVAERVIQKI SLSYTLGAIE FHSGASIGIT ISGNKLDTSE SMLRNADTAM
YQAKANGKGC YVIFDDSASQ QKMQDIAFEN DFKQALQTGE LQLQFWPIVD LLTLQTQALE
CRLTWEHPQW GTIPQEILSQ LAEQANLMVE LDKYTISLLD KSYHQLLANQ GDKVELHLML
SSQHLKHKHA LRGLKNALKQ TKLALPQLWL FFNEKALVLE TENHINGFEL LKKLDVNLGI
SHYGSGHSSL NSLLFLPIKG LKLDANITKQ LQDEQHIKLM SAYQKAASTL DLQTFVDGLQ
SVEQIKIFHA LGYRFGQGGA LASPFLLSDT TQQVCA
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