Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3644 |
Symbol | |
ID | 4256142 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 4338635 |
End bp | 4340017 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638124328 |
Product | HlyD family type I secretion membrane fusion protein |
Protein accession | YP_739681 |
Protein GI | 114049131 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTAAAA ATCTAACCGC ACACGATTTA GACATGGTGG ATGATGTTTA TGGCGCAATG ATGACTGATG CCCCTAGTGG ACACCGACTC ATCATCTGGG CCTTAGCTGC TATGGTGGTC TGCTTCCTGT TATGGGCAGG TTTTGCCCAG TTGGATAAGG TCACCACAGG TTCGGGTAAG GTGATACCCT CTTCACAAGT GCAAGTGATC CAGAGTCTCG ACGGCGGGAT TATGCAGGAA CTCTACGTGC GAGAAGGGGA TATAGTGACT AAGGGACAAC CCTTAGTTCG CATCGATGAC ACTCGTTTTC GCTCCGATTT CGCACAACAA GAGCAGGAGG TTTTTGGCTT AAAAACCAAT GTTATCCGTA TGCGTGCCGA GTTGGATAGC ATACTGATAT CAGATATGAC ATCTGATTGG CGTGAGCAAG TTAAAATCAC CAAAAAAGCC TTAGTCTTCC CCGAAAGCCT GACAGAGGCA GAGCCCGCGT TGGTGAAAAG ACAGCAAGAA GAGTACAACG GCCGCTTAGA CAATCTGAGT AACCAGTTGG AAATTCTGGT GCGCCAAATC CAGCAAAGGC AACAGGAAAT TGATGATCTC GCCTCAAAAA CCACAACCCT GACAACGAGT ATGCAACTGA TTTCGAGGGA ACTCGAACTC ACTCGACCAC TTGCCAAAAA AGGCATCGTG CCCGAAGTCG AATTACTCAA ATTAGAACGT GCCGTTAACG ATGCCCAAGG TGAGCTAAAC TCCTTACGAT TACTCAGACC TAAGCTGAAG GCCGCATTAG ACGAAGCCAT TCTCAAACGC CGTGAAGCTG TATTTGTCTA TGCAGCCGAT CTACGCGCCC AACTTAACGA AACTCAAACT CGCTTATCAC GCATGAATGA AGCCCAAGTC GGGGCACAGG ATAAGGTGAG TAAAGCCATT ATTACTTCTC CTGTTAACGG CACCATCAAA TCTGTGCATA TCAATACCTT AGGCGGGGTT GTCCAGCCTG GCGTCGATAT TGTAGAAATC GTTCCTTCAG AAGATCAGTT GCTAATAGAA ACGAAAATCC TGCCAAAGGA TATCGCGTTT CTGCACACGG GATTACCCGC GGTCGTGAAA GTCACAGCCT ACGATTTTAC CCGTTACGGC GGCCTAAAAG GTACAGTTGA GCATATTAGT GCTGATACTT CACAGGACGA AGAAGGAAAT AGCTTCTACC TTATAAAGGT GAGAACAGAA GAATCCAGTT TAGTAAAAGA CGATGGCACA CAGATGCCAA TTATCCCGGG GATGTTAACA ACCGTTGATG TCATCACCGG ACAAAGATCC ATTCTTGAGT ACATTTTAAA TCCAATTTTA AGGGCTAAGG ATACCGCGCT CAGAGAGCGT TAA
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Protein sequence | MSKNLTAHDL DMVDDVYGAM MTDAPSGHRL IIWALAAMVV CFLLWAGFAQ LDKVTTGSGK VIPSSQVQVI QSLDGGIMQE LYVREGDIVT KGQPLVRIDD TRFRSDFAQQ EQEVFGLKTN VIRMRAELDS ILISDMTSDW REQVKITKKA LVFPESLTEA EPALVKRQQE EYNGRLDNLS NQLEILVRQI QQRQQEIDDL ASKTTTLTTS MQLISRELEL TRPLAKKGIV PEVELLKLER AVNDAQGELN SLRLLRPKLK AALDEAILKR REAVFVYAAD LRAQLNETQT RLSRMNEAQV GAQDKVSKAI ITSPVNGTIK SVHINTLGGV VQPGVDIVEI VPSEDQLLIE TKILPKDIAF LHTGLPAVVK VTAYDFTRYG GLKGTVEHIS ADTSQDEEGN SFYLIKVRTE ESSLVKDDGT QMPIIPGMLT TVDVITGQRS ILEYILNPIL RAKDTALRER
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