| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3596 |
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| Symbol | |
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| ID | 4255015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 4269946 |
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| End bp | 4274346 |
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| Gene Length | 4401 bp |
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| Protein Length | 1466 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638124280 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_739633 |
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| Protein GI | 114049083 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.872186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTTGGG CCGGTGGATT TGTGCAGCGT GTTTTCACCG ACAGAGATGG ACTAGCCGCC
ACTAGTATCC GTGGCTTGAC CTTAGATGAC CATGGTTTCA TCTGGGCGGC GACGGAGCAG
GGCTTATATC GGGTTAGCAA TTCTAAGGTC AGACGCATAG ACAAAACGGG TAACGAATCC
CGCCTTGCGG ATGATTTCCT CAACTCAGTG GTCAATGTTG GGCAAGACAA ACTGCTGGTG
AGCACCAACG CGGCGCTTTA CCTCTACGAT ATCCGCAACA ATCAATTTAC CCTGTTTGGC
TCCCCCGATT TGTTTCCACA CTTTCCCGGT GGCGCCATGT TGTCTGTTGC GCAGATGGAT
GCCCAGCGTT GGCTATTGCT CATTGATAAT GGCCAGATTT ATCAATATTC GCCTACGACT
TCTGAACTCA CTCTGGTGAC TCAACTGGCG GTTAATCGCG ATCTGCCTTG GCGCAAGCTA
TTGGTGCTAC CCAATGAGCA AATACTACTA GCGGGGCAAT TTGATTTATT GCTGCTGGAT
AAGACAGGTA AAACCTTAAG CAAATATCCT TGGACTGAGT CTATGGGAAG CATTCTCGAT
ATGCTTGAGG ATACAAAGCA TAGAGTTTGG TTGGCGACGA GCCGCGGCGT GTATCGGTTT
GATCCCAGCT CGCAGCAACT TGAGGCTGTG GCAGAATTAC CCGATTGGAG CACAGTGATT
GTTGAGGATC CTAAGGGGGC GTTGTGGTTT GCCAGCCGTT TTGGTCTGTT GAAATGGTCA
CCTGAGACGC ACCAGATTGA GAGTTATCAA GAGGAACTAA AAAAGCAGGC CAATATGGAA
ATCCTCAAGG CCATGCTGTT TGATGACTCA GGCTTAATGT GGGTGGGCGG CTCGGGTGAT
GGTTTGGCAT TGTTGGCATC ACAGCCCGAT TTTATCTTAG AGACTTATAC GGCAGATAAA
CCTTATGCGC TGAGCGATGC CATGATTTGG TCGATTCTAG CAGCACCAGA GGGGCTCTGG
TTTGGCTCAT CCAATGTGAT GTTTATTGCC AAGGATACTC AGCAAGCTAT TGATATCCCG
ATTGAAGGCT TGCTCTCCCA TGAGAGCATT TACGATATCA GAGCATTTTC TGAGCATTAT
TTGCTGGTCT CTACCACTAG TGGCTTGTTT GTAGTCGATA GGACAGCCTT AAAGGGACAG
AGCTTTGCAC AATGGATAAA TGGGCAGGAT GAATTTAAAA ACAAGCTGGT TTACCGCACC
TATATCGATC CTTTGTTAAA GGGGCGAGTG TGGATTGCCA GTTCCAATGG GCTGTATTTC
TGGGAGCTCG GCTTAAAAGC GCCACAAGCA TTTAATATCG ATAAGCTCTC TGAAGGGGAT
GTTGAGCCGA AGCGCCCAGC GATTCGAACC TTGTATCGTG CCTCCGACGG TAAGCTGTGG
ATTGGAGGTA AACGAGTTTT TGGCTATCTG GACGAGGCGA ATGAATTCCA TGATCAGCGC
AGCCTATTTA ATGGCTTGAG TGCCATGCCC ACCATTAGCC ATATCGAAGA AATGTCTCCA
GGGATCATGT GGTTTGGCTC CTACGAAAAG GGATTATTCG AGTATCACCT CAATAGCAGT
GAACTGGTTT CTCTAACCGC GCTATGGCAA GTGAGTTGCA GCTCAGTGTT TTTTATCCAA
AAGACGCCTA AAGCCAATCT GGTAGCCTGC GCCGATTCGC TTATCCGCCA AGATATCGCA
ACTGGCCATA TCGAAATGTT TAATCAACTC GATGGGTTAA TTTCCGATGA AATGAATGAA
GGTGCGTATT TTTATTCGCC TGAGTTGGGC TTGTATCTTG GCACACCGGA TGGCGTCATG
CACCTCGATG TGGATAAGCT GACCAACCGG ATCACCGACG ATCATGTGAT GCTCGAGTCT
GTGTCTGTCT ATTACGATAA CAGCACCGAA GTTTCCCTAT TACCCCAGCC CATGATGCAG
ATTAAGCCCG ATGCCAGCAT GGTGAGTTTG CAGATCACAA ACCTTGATTA TCTCGATGAT
TCGCCGATTC AATTTAAATA TCGGCTGCGT TATCAAGGAG AAGATGATAA CTACGTACTG
CTCCAAGGCG AGTCACAGAT AAACCTCGCC GGACTCGCTG CGGGTGAGTA TGGGCTGGAA
ATTTTAAGCC AAGTGAATGG GATATGGTCG GATAAACCCT TCGTTTATCC CTTCTATGTT
GAGCAACATT GGTGGCTGAC TCAAGGCTTT AAGGGCATAT TACTGTTGGT GTTTTCGATA
ATTGCCCTGA GTCTGGCCTG GTATCGTCAG CGCCAAGTTC GTACTTTTAT GGCGATGAAC
CAAGCGCTGA CCGAGAGTGA TGATCGCTTG CGCCAGTCGT TGCGCGGTAG CGATTCCGAT
CTCTGGGAAT GGCACCGAGA TACCCAGAGC TTTTACCTCG ATAACCGCGG TTCTGTGCTT
GGCAGCCACG CCAATGAGAT AGTTGCGACC CTAGAGACGC TTCCAGTCCA CCCTGAGGAT
AGGGGTAAAG CCTTAGCTCA GTGGAACAGT ATGCTGGCGG GGGAAATTGA CAGATTTGAG
GCTGAATATC GTTACCAACG TCGCAGTGGT AATTGGGGCT GGTTAAGGGT GCGCGGGCGT
CCTGTGGCTC GTAATAAACA AACCCAAGTT ATTGAGCGGG TAGCGGGTAT TTATAGTGAT
ATTACCTTAC AGCGTCAGCT AGAGGATGAA ATCAATCTCC TCGCTCAAGC CTTTGAGAAT
ACCTCCGAGG GGGTGTTGAT CTTAGACGTG GATGAAAACA TTCGGGTGGC GAACCATGCG
GCGCAGCAAA TTATAGGTTC GGAGCAGCAT AATCTTGTTG GCCAATCATT TTCCCAATTT
GTGCAAATGA AGGATGGCCT ATCGGCGGAA GTACATCAGT TACTCGGTCA AGACAGTTCG
TGGACGGGGG AACGTGAGTT AGTGGGGCAG AATGGGGTGA TTTGCCCCGT ATGGCTTAAC
GTCTCTGTGA TGCAATCTGC TAGCGATAGT TCACTGCATT ATGTCATTGT ATTTTCAGAT
ATCACCGAGC GGAAACGTAC CGAGGCGGAC TTAAGACGAC TGGCTAATTA TGATGTGTTA
ACTGGATTGC CGAACCGCTC TTTATTTTCT TCTAGGTTAT TACAGTCGAT ACAAATGGCG
CAGCAAAGCG GTGAAAAGCT GGCGTTGTTA TTTTTGGACC TTGATCGATT TAAGCATGTT
AACGACTCCT ACGGCCACAG TATGGGCGAT GCCTTGTTGG TTGAAGCTTC AAACCGCTTG
CAGTCTTGTA TCGGCAGTGA GCATTTATTG TGTCGTTTTG GCGGCGATGA GTTTGTAATC
CTGCTTAGAA ACGCTAACAA TCTCAATGAA ATTAACCATA TTGCCGAGCG ATTACTCGCG
CAAATTGTCG CGCCATTCAA ATTGTTTGGT CGGGAGTTTT ACATTTCGAC CAGTATCGGC
ATCAGTATTT GGCCCGATGA TGCGGTGCAG CCCGAAGCCT TTATTAAAAA TGCCGACCTG
GCCATGTACC ACGCCAAGGA AGAAGGGCGC GGCAACTTTA AATATTATTC CTCGGAGCGC
AATGCCCAAG CCTTATATCA TTTACGCTTG GAGGCGGATT TACGTAAGGC CATCGAGCGG
GAAGAGTTTG AACTCTATTA CCAGCCGCAA ATTGATATCT TACGGGGCGA TAAATTTATT
GGGATGGAAG CCTTAATTCG TTGGCGCCAT CCTAAGGAAG GTTACATCCG TCCCGATATT
TTTATTAAGG TCGCCGAAGC TTGTGGATTA GTGGTTGAAA TCGACCGCTG GGTATTTCGT
CGAGCCTGTT TAGACGGTGC TAAATGGGTA AAACGTTGTG CCACACAGTT TAAATTGTCG
GTGAATATTT CGGCGGTACA TTTCCGCCAG CCAGATTTTA TTGATGGCAT AAAGAAAATT
TTGGCCGATA CACAAATGCC GGCTTCATCC CTCGGGTTAG AAATCACCGA AGGGGTGTTG
ATGAAGGAAG TGCAAGCGGC GAAAAGTCAC CTTACTCAGC TTAAAGAGTT GGGGATTGAA
GTCGCCATCG ACGACTTTGG TACTGGCTAT TCTTCGTTGG CTTACTTACG TCATTTTGAT
GTAAATACCT TAAAGATTGA TCGCTCCTTC TTAATTGATA TCGCCACCAA CTCTGCGGAT
CAGGCTATTG TCAGTAGTAT TATTGAGTTG GCCCGCAACT TGAAATTAAC CGTGGTGGCC
GAAGGGGTCG AAACCGTTGA GCAATTGGAG CAGGTCTTTA GCCGCGGTTG TTATATTGTG
CAGGGCTATT ACTTTGCAAA ACCTATGTCG GTCACTGACT TTGAGCGGTA TTTATTGCAA
AAAAGTACAC TGAGCTCTTA A
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| Protein sequence | MVWAGGFVQR VFTDRDGLAA TSIRGLTLDD HGFIWAATEQ GLYRVSNSKV RRIDKTGNES
RLADDFLNSV VNVGQDKLLV STNAALYLYD IRNNQFTLFG SPDLFPHFPG GAMLSVAQMD
AQRWLLLIDN GQIYQYSPTT SELTLVTQLA VNRDLPWRKL LVLPNEQILL AGQFDLLLLD
KTGKTLSKYP WTESMGSILD MLEDTKHRVW LATSRGVYRF DPSSQQLEAV AELPDWSTVI
VEDPKGALWF ASRFGLLKWS PETHQIESYQ EELKKQANME ILKAMLFDDS GLMWVGGSGD
GLALLASQPD FILETYTADK PYALSDAMIW SILAAPEGLW FGSSNVMFIA KDTQQAIDIP
IEGLLSHESI YDIRAFSEHY LLVSTTSGLF VVDRTALKGQ SFAQWINGQD EFKNKLVYRT
YIDPLLKGRV WIASSNGLYF WELGLKAPQA FNIDKLSEGD VEPKRPAIRT LYRASDGKLW
IGGKRVFGYL DEANEFHDQR SLFNGLSAMP TISHIEEMSP GIMWFGSYEK GLFEYHLNSS
ELVSLTALWQ VSCSSVFFIQ KTPKANLVAC ADSLIRQDIA TGHIEMFNQL DGLISDEMNE
GAYFYSPELG LYLGTPDGVM HLDVDKLTNR ITDDHVMLES VSVYYDNSTE VSLLPQPMMQ
IKPDASMVSL QITNLDYLDD SPIQFKYRLR YQGEDDNYVL LQGESQINLA GLAAGEYGLE
ILSQVNGIWS DKPFVYPFYV EQHWWLTQGF KGILLLVFSI IALSLAWYRQ RQVRTFMAMN
QALTESDDRL RQSLRGSDSD LWEWHRDTQS FYLDNRGSVL GSHANEIVAT LETLPVHPED
RGKALAQWNS MLAGEIDRFE AEYRYQRRSG NWGWLRVRGR PVARNKQTQV IERVAGIYSD
ITLQRQLEDE INLLAQAFEN TSEGVLILDV DENIRVANHA AQQIIGSEQH NLVGQSFSQF
VQMKDGLSAE VHQLLGQDSS WTGERELVGQ NGVICPVWLN VSVMQSASDS SLHYVIVFSD
ITERKRTEAD LRRLANYDVL TGLPNRSLFS SRLLQSIQMA QQSGEKLALL FLDLDRFKHV
NDSYGHSMGD ALLVEASNRL QSCIGSEHLL CRFGGDEFVI LLRNANNLNE INHIAERLLA
QIVAPFKLFG REFYISTSIG ISIWPDDAVQ PEAFIKNADL AMYHAKEEGR GNFKYYSSER
NAQALYHLRL EADLRKAIER EEFELYYQPQ IDILRGDKFI GMEALIRWRH PKEGYIRPDI
FIKVAEACGL VVEIDRWVFR RACLDGAKWV KRCATQFKLS VNISAVHFRQ PDFIDGIKKI
LADTQMPASS LGLEITEGVL MKEVQAAKSH LTQLKELGIE VAIDDFGTGY SSLAYLRHFD
VNTLKIDRSF LIDIATNSAD QAIVSSIIEL ARNLKLTVVA EGVETVEQLE QVFSRGCYIV
QGYYFAKPMS VTDFERYLLQ KSTLSS
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