Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3589 |
Symbol | |
ID | 4257974 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 4256351 |
End bp | 4258921 |
Gene Length | 2571 bp |
Protein Length | 856 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638124273 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_739626 |
Protein GI | 114049076 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACATTG GCAACAAAAT ATTGGTATTT ATTGCAGGAT TCTGTCTACC AGCAGTTGTG CTTGTGTCAT ATTGTCTTGG CTATTGGTTC GACCATAGGG TCGAGTTGCT GCGGCAGGAC AATATCCAGC ATGAACTCAC AAACGTTCAA CAGCAGTTTC TTATCGATAT CGACCGTTTA AGTTTTCTCA CCCAAATCTA TGCCTCTCCG CTGTCTCGAG TCGATGGCGA ACTGCTGCAA TCGATAGAAT CATCATGGCT TGAGAGTGCC ATGTCCGCCA ATCTGCATTG GTTTATTCTG CAAGCTGGAC AGCTGCAGAG TGTCCTCGCT AATACTTCCA GCCTTGCATT ATCGACCCAA CAAGAGATTG CCGATGCGGT GCTCGCCGCC AATAAACCAA AGGTTGCAGG GGCTTATCTT GCCGGAGATA CAGGCTTAGT CGTCACCGCG GTTGCCGTCG CGCCCGAGGA ATACGTGCTC TTGGTGCGGC AGATATCGGC GCAGGATTTA TTGGAATATG CCCAAGCACC ATTAGTCACT CAAGTGTTGA TGAGCCGCAG CAACACCACG GTTGCTAAAG ATTACCTCAG CTTTGTGCCC ATCCCGAGTT TATTGAATAA CGCGCCATTG TATCTGCAGG TGCAGTTTTC TACTGATCCC TTGCAGGAGG TTAAGCTCGA TCTCGATTGG GTTTCAGTCG GTATTATTTT ACTCGGTGTA TTAATTGTGG CGCTGGGCTA CATTTGGCTC AGAACTGGTC TTTTAAAGCC GTTTCAGAGC ATGATGCAGC AGTTGGCATT GGTCGATCCT ATGGCAAGCG TTTATCGGCC TGTGAGCGGC GAAGGTAACG CCGAGTTAGA AGTGCTGGCA AGCCGTGTAA ACAGCTTACT TGCTCGCATA TATCAGCAGA AAGAACGCGG TAAAACTACC CTAGAATCGA TTGCCGAGGC GGTGATCCTG ACCGATATCG ATGCCAAAGT GATCTACATG AATCCCAAGG CCGAGTCCTT GCTCGATGTT GCCAGCTGTT ATGCCGTTGG CCAGAGCCTA GCATCGTTAT TAAAAGCGGG GGAGCAGTTA AATCAAGCGG TATTCCAGTG TATGCGCCTA GGTGAGACTA CGCCTCAAGT CGCTAAAATC AAGTTATTAA CCGCAACACC ACGGATTATC GAACGCAGCA TTAGTAACGT GTTGAACCAC GATAAAGAGA TTACCGGCAC TGTGGTGGTA CTGCGGGATA TTACCCAAGA AGAGCTGCTC AAGCGTCAGC TACAAAAACG CGCCAACTTC GATGGCATTA CCGGCTTGCT TAATCGGCAA GCCTTTGAAG AGCAGTTACC GCAGTTCGCT GGTCAGGCTA AGCGCTTAGC CGTGTGTTAT CTGGATTTAG AGCAGTTTAA GCTGATAAAC GATAGTTGTG GTCATACCGC TGGCGACCGC ATGTTGGCCA TGGTGGCGCG GGCGATTCAA TCCTGTCTGG GGCCGCAGGC ATTATTAGCC CGTTTAGGTG GCGATGAATT TGGCTTGGTC ATTTGCGACA GCACAGCCTT GGCCGTGGCG CAGCAGCTAA AACAGATTAT TGCGCAGGTA TCGCTGCAAG TGCTGCATGA TAAAAACTGT AACTATAAAG TCGGTTTGAG TATCGGTGTC GCCTTTGGAC GAGCGCCCTA TATCAATGCG TTAGAGCTAC TCAAGGATGC GGATATTGCT TGTATCGCTG CCAAAGCCAA GGGCACAAAC CAAATCCATT TTTATGATGA TAAAGATAAA GAACTGACCT ATCAGCGCAA TGCCCCAAAA TGGGCGGTGC GTATTGCGCA AGCGATTGAG GAAAATGAAC TCCTGCTCTA CTACCAACCG ATCCGCGGTT TAGGGGCGAG TTCTAAACGG CAACGGATGG AAATCCTGCT CAGGATCCAA GAACCCTGCG GCCGTATTTT GGCTCCAGCG CAGTTTATTG CCGCTGCTGA GCGCTTTAAG TTGATGCCTG AAATCGATAA AGAAGTGATA CGTAAAGCTT TTTTATGGCT ATCCTTAAAT CCTCAGCTTT GGCCGGATCA CTGTATTTCA ATCAACCTTT CAGGCAATAG CTTAGGCGCC GAAGGCATGG TGGAATATAT CGCTCAGCAG CAACATATTT TCGATATTCC GAGCCAGTGT GTTTGCTTTG AAATCACCGA AACCACTGCG ATTCAAAATC GCCACCGCGG CATGGAGATG CTTAGGCAGC TGCGTAAACT CGGGTTTTCC TTTGCATTGG ATGATTTTGG AAGCGGCTTT GCGTCCTATG GTTATCTGCG GGAGCTACCA GTGGACTATG TCAAAATTGA TGGTTGCTTT GTGAAAAACC TTGCGGTTAA TGCCAAGGAT TATGCCATCG TCAAATCGAT TCAGGACGTG TGCCGAGTGA TGGGGATTGA GACCGTCGCC GAATTTGTGG AAAACCAAGA TATTATCGAT AGATTACAGG TAATTGGTAT TAACTATGCT CAAGGTTATG CGATAGGACG GCCGCAACCT TTGACCAGTT ATTGCGAACC GTTTGCAGTA CCGCAAGCAC AACGCGCATA A
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Protein sequence | MHIGNKILVF IAGFCLPAVV LVSYCLGYWF DHRVELLRQD NIQHELTNVQ QQFLIDIDRL SFLTQIYASP LSRVDGELLQ SIESSWLESA MSANLHWFIL QAGQLQSVLA NTSSLALSTQ QEIADAVLAA NKPKVAGAYL AGDTGLVVTA VAVAPEEYVL LVRQISAQDL LEYAQAPLVT QVLMSRSNTT VAKDYLSFVP IPSLLNNAPL YLQVQFSTDP LQEVKLDLDW VSVGIILLGV LIVALGYIWL RTGLLKPFQS MMQQLALVDP MASVYRPVSG EGNAELEVLA SRVNSLLARI YQQKERGKTT LESIAEAVIL TDIDAKVIYM NPKAESLLDV ASCYAVGQSL ASLLKAGEQL NQAVFQCMRL GETTPQVAKI KLLTATPRII ERSISNVLNH DKEITGTVVV LRDITQEELL KRQLQKRANF DGITGLLNRQ AFEEQLPQFA GQAKRLAVCY LDLEQFKLIN DSCGHTAGDR MLAMVARAIQ SCLGPQALLA RLGGDEFGLV ICDSTALAVA QQLKQIIAQV SLQVLHDKNC NYKVGLSIGV AFGRAPYINA LELLKDADIA CIAAKAKGTN QIHFYDDKDK ELTYQRNAPK WAVRIAQAIE ENELLLYYQP IRGLGASSKR QRMEILLRIQ EPCGRILAPA QFIAAAERFK LMPEIDKEVI RKAFLWLSLN PQLWPDHCIS INLSGNSLGA EGMVEYIAQQ QHIFDIPSQC VCFEITETTA IQNRHRGMEM LRQLRKLGFS FALDDFGSGF ASYGYLRELP VDYVKIDGCF VKNLAVNAKD YAIVKSIQDV CRVMGIETVA EFVENQDIID RLQVIGINYA QGYAIGRPQP LTSYCEPFAV PQAQRA
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