| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3569 |
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| Symbol | |
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| ID | 4257954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 4233655 |
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| End bp | 4235688 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638124253 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_739606 |
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| Protein GI | 114049056 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATT CCGAACAAGG ACTAGGCGCT AAGACCAGTG ACTGGCCCAA GGCGCTGTTT
TACACCGCGC TACTTTTCTC TATTTTTCAA ATCATTACCG CCGCTTTTCA TCCCGTATCG
ACCCAAGTTT TGCGGGCAAC CCACGTTGGC TTTTTACTGT TAATCGTATT TTTAAGTTAT
CCGGCGGTGG GCAAGTCTCG CCCTTGGCAG CCCTTAGCCT GGGTACTTGG CCTCGCGGGT
ATGGCAACGG CCGCCTATCA ATGGTTTTTT GAGGCCGACC TGATCCAGCG CTCCGGTGAA
CTCACCGATG CCGATATGGT GATTGGCGTT GTGCTGATTG TCTTAGTGTT TGAAGCTGCG
CGGCGGGTGA TGGGCTGGGC ACTGCCGATT ATCTGCTGTA TTTTCTTGGC CTACGGCTTA
TTCGGCCAAT ATCTCCCCGG TGACTTAATG CACCGTGGCT ACGGTGTTGA TCAAATTATC
AATCAGTTAT CCTTCGGTAC CGAAGGGCTC TACGGCACAC CAACCTATGT GTCGGCTACC
TATATCTTCT TATTTATTCT CTTTGGTGCC TTTTTAGAGC AGGCGGGGAT GATCCGTCTG
TTTACCGATT TTGCCATGGG CTTATTCGGC CATAAACTCG GCGGCCCGGC GAAAGTGGCC
GTGGTTTCTT CGGCGATGAT GGGCACAATT ACGGGCTCGG GCGTTGCCAA CGTGGTGACC
ACGGGGCAAT TTACCATTCC CTTGATGAAA CGCTTCGGCT ACCGCCCCGC CTTTGCCGGC
GGTGTAGAAG CCACTTCCAG TATGGGCAGC CAAATTATGC CGCCCATCAT GGGCGCGGTG
GCCTTTATCA TGGCCGAAAC TATTAACGTG CCGTTTATTG AAATCGCCAA AGCGGCGTTA
ATCCCCGCTC TGTTGTATTT CAGCTCAGTG TTCTGGATGG TGCATCTGGA AGCCAAACGC
GCCAATCTCT GCGGTTTACC CAAGGATCAA TGTCCCGACC CTTGGGCGGC AGTGAAGGAG
CGCTGGTATC TGCTTATCCC ACTGTTTATT TTGATTTACT TGCTGTTTTC AGGTCGTACG
CCGCTGTTCT CCGGCATGGT CGGTTTAGCA TTGACTTCGA TTGTGATCTT AGGCTCTGCG
ATTGTGCTGC GCCTACCTTC TAATGCGATG CGCTTCGCCT TTTGGATTGC CCTTGGGGTG
TTGTGTGCTG GTTTCTTCCA GATGGGTATC GCCGTCGTCT TTGGGGTCAT CGCCTTACTT
GTCGCTGTCT GCTGGTTTAT CAAAGGGGGT AAAGATACCC TGACAATCTG CCTGCACGCT
TTAGTCGATG GCGCTCGCCA TGCGGTGCCT GTGGGGATTG CCTGCGCCCT GGTTGGGGTG
ATTATCGGTA TCGTCTCGCT GACGGGAATT GCCTCAACCT TCGCCAGTTA CATCCTCGCC
GTGGGTCAAG ATAACCTCTT CCTCTCGCTG GTGTTAACTA TGCTCACCTG CATGGTGTTG
GGCATGGGCA TCCCGAGTAT CCCTAACTAC ATTATTACCA GCTCGATTGC CGCACCTGCC
CTGCTGGACT TAGGTGTGCC GCTGATCGTC TCCCATATGT TTGTGTTTTA CTTTGGGATT
ATGGCCGACC TCACGCCTCC CGTCGCCTTG GCCTGCTTTG CCGCCGCGCC AATCGCAAAA
GAATCGGGGC TGAAGATCAG TCTATGGGCG ATTCGCATCG CTATCGCTGG CTTTGTGATC
CCCTTTATGG CGGTTTACGA TCCGGCGCTT ATGCTACAAA GCGATAGCTG GCTTGCCATC
GGCTTTGTGA TGTTAAAAGC CACCGTGGGC ATTGGTATCT GGGGCGTGAT CTTTACCGGT
TTCTTACTAC AAAAACTCTA TTGGTGGGAA CGGGTTATCG GCTTCCTCGC CGGTGCCAGT
TTAATCCTTG CGACACCGCT CAGTGATGAA ATCGGCTTTG GTCTGGCGCT ACTCTTTATC
GTGCAGCACA GCCTTAGAGC GCGCAAACTG AAACGTCTTG CCGAGCAGGG GTAA
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| Protein sequence | MSDSEQGLGA KTSDWPKALF YTALLFSIFQ IITAAFHPVS TQVLRATHVG FLLLIVFLSY
PAVGKSRPWQ PLAWVLGLAG MATAAYQWFF EADLIQRSGE LTDADMVIGV VLIVLVFEAA
RRVMGWALPI ICCIFLAYGL FGQYLPGDLM HRGYGVDQII NQLSFGTEGL YGTPTYVSAT
YIFLFILFGA FLEQAGMIRL FTDFAMGLFG HKLGGPAKVA VVSSAMMGTI TGSGVANVVT
TGQFTIPLMK RFGYRPAFAG GVEATSSMGS QIMPPIMGAV AFIMAETINV PFIEIAKAAL
IPALLYFSSV FWMVHLEAKR ANLCGLPKDQ CPDPWAAVKE RWYLLIPLFI LIYLLFSGRT
PLFSGMVGLA LTSIVILGSA IVLRLPSNAM RFAFWIALGV LCAGFFQMGI AVVFGVIALL
VAVCWFIKGG KDTLTICLHA LVDGARHAVP VGIACALVGV IIGIVSLTGI ASTFASYILA
VGQDNLFLSL VLTMLTCMVL GMGIPSIPNY IITSSIAAPA LLDLGVPLIV SHMFVFYFGI
MADLTPPVAL ACFAAAPIAK ESGLKISLWA IRIAIAGFVI PFMAVYDPAL MLQSDSWLAI
GFVMLKATVG IGIWGVIFTG FLLQKLYWWE RVIGFLAGAS LILATPLSDE IGFGLALLFI
VQHSLRARKL KRLAEQG
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