Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3548 |
Symbol | |
ID | 4255854 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 4205176 |
End bp | 4210221 |
Gene Length | 5046 bp |
Protein Length | 1681 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638124232 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_739585 |
Protein GI | 114049035 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGTTT TTGGCATTTC ATCGGGTCAT TTATACAGGA CCATTCGACA AGTCTTGGCG GTCATTTGCT GTCATAAACA ACAAATCCAT CTTGGGAAGC GTATCGCTTC TCTGGGATAT GTTGTTTGCC TAGTGAGTTT ATTCGCCGTG CATTTTGGGC TATTCCCTAA TATGGCAATG GCAAACGAGG TCTCACAACA ACAGTATCGT CAAGCGTTAT CTCAGTTGAC GCCCGCGCAA AAGCTCGCCC ATAGCCATAG GGTGAGTATG ATCTTGGAAT CGGATAGACC CTTTTGGCAT CAAATTGCTA AGTTTGCCAA GATTGCGGCG ATGGATCTCA ATATCCAGCT CGACGTTGTT TACGGTGATG GCACCCCGGA AACCCTACTC AAACTGGGCC ATGAGGCGAT AGATAACAAG GTCTCTGGGA TTGTATTTGT TCCCGTTTCG GGTATGGGGC AGGAACTCTT AGCCGAGGCT AATCAGCAGC ATATACCTGT TGTGACCATC AATTCTGAAT TTAAACAAAG CTCATTATCC CTCAGGACCC AAAACCCCAA CTGGATTGGC CGAGTAGCGA TAAACAACAC CAACCTCGGA CAGAGTCTGC TCGAAAAAAT GTTTGAGCAT GAAAACTCTG CCGAGCGGAT GAATGTGCTG TTACTCGCGG GAAACAAAGA TAACCTCGAT GTGCAAAAGC GTACCGCTGA ACTGAAAAGT GCGGTGAACA AGCAATTTGC CAATGCCAAG CTCAAAGTGG TGAATACCGA TTGGACGGCC TCGGCGGCGC GTGATGCTTA TCTAAAAGCC ATAAAACAAG ATCCTAGTAT CAACACTGTG ATTGCCATGG ATACCACAAT GGCCTTGGCG GTGAGTCATG AGGCCGAAGC CAGTACACTA AGACCCATTC CCCATATTGC CTCGTTAAGT TGGGATTATC AGCTCGCTCA AGGGATCCAA AATGGCACTA TCGCCGCGGG TGTCGGTGGC GTGGAGTTTC AGGGCGCATT TAGCCTGGTG CTGCTGTTCG ACTACTTAAA CGGAGTGGAT ATTCGTTCCA AGGGGGCGGA GTTTTTAATC GCGCCCTTGA TCATCAGCCC GAATAACTAT AACGATTACT ACGAGTTACT CGATTTTGAC TCACTACAAC CCGATTTTGC CCGTGTCTCG TTGGCGCTCA ATAAAAATCT GTTTTTGGTC GATTTTCGCT TAGGTGCACT GATCCCCAAT ATGGATTTGC ATCGCTTTAT GAGCATATTA ACCGTTGAGG AAAGGGCCTT TATCAACAAC AACCCCATAG TGAGGGTTGG CGTGGATCCC CATTCTGCTC CAATTGATTT TATTGATGAA AACGGTATTC ACCGCGGCAT GATGGCGGAT TATCTCGCCG AAATCAGCCG TGTGGTGCCA CTGATTTTTC AGACCTATAA CGAAGGTTCT TGGCAGCAAG CGGTCGAGGA ATTTAAACAC CGTAAAGTGG ATATGTTATC TCTGGCGTCG GCGGGCTCTG GGCGTGAGCA GTGGATGCTA TTTACCGATC CCCTAAATCA GTATCCGCCC GTGATTGTGA CCCCTATTGA GGGGACACAC TTTAATAGTC TTGAAAGCCT CAAGGGTAAG TCGGTCAGCG TGGTTGCTGG CGACATTACT CAAAACCATT TGCTTGATGA CTATCCTGAT ATTGTACTGG TCCCCGTCAG CAACTTGGAG CAGGCCTTAA CGGCGGTGGA TAAGCGTCAG GTGGATGCGG CCTTTGTAAA TTTCCCGAGT ACCGCACACT TACTCCAGTC CCCCCCCTTT AATCGCCTCC AGATAACGGC CGCCACTGAC TATCGTTTTG GCATTTCTAT GGGAGTGCGT AAGGACTGGC CCGAGCTGCA GAGCATCTTA AACAAGGCAT TTGCACAAAT TCCGCAGGAT AAGGCACGCG AAATTCAGCA CCGTTGGGTG AATGTGCAAT ATGACCTGGG GTTAAAGAAG CAGCAAGTGT TTAACTGGGC GGTGCGGATT GCCGTGGCGG TCTTGCTGGT GCTGTTTCTT TTTAGCTTGC GCAACAGGCG GTTAAATAAG GATATCGCGC AGCGGATCCA CACAGAACAG CAGCTAAGCC TGAGCATGCA CAAGTTTCAG GCGCTGTTCG ATTCTGCGGT CGATGCCTGT GTCATTACCG ATAGCCAAGG GGTGATCATT GAATGTAACA GTGCGTTGCT GTCATTACTT AAGTATCAGA GTAAAGACCA ACTCATTGGT CAGCGCACCT TAGTCTATTA CCCCGAACAG AGCGACGATG CTTTAAATCA GAGCGTGTTT GAGCGGCGTC TGCAAACCGT GCTAGACCAA GGGCAGCTTA AGTTTGAATC CGAGTTTATT ACCACTGCGG CAGAGATCAT TCATGTTGAT GTGACGCTTA AGCGAATCGA GCTCAATGGC TCCCTGTTTG TGCTCGGGTC ATACCACGAT CTGTCGGAAC GAAAATTGAT GAATGCCTTG CTCGAGCGCG AGCGGGATCT GCTTAAAAAC GTATTAGGCA GAAGTCCGAT CGGCGTCTGG ATCTGTGTTG AAGGGGTTTG CCGTTATGTG AATGAGCAGA TTACCGAGAT GACGGGGCTA GAAGTCGGCC AATCTGTTTA TCGGATTTTT GTGCAGCCCG AAGACTACCG TTGCCATATT CGTGAATTGG ATTTAAGCCA AGACAGTACC GTATTTGAGA CACAACTGTT TGATGCCCAT GGGCAGCGCC GCGATGTGCT GCTGACCTCT TATCACACAG TGCAGGATGG CCAAAATGCT AACCTCTGTT GGGCCTTAGA TATTACCGAC ACTAAGTCGA TCCAGGATGA GTTAGCCATA GCAAAAGATG CTGCCGAGGC GGCTAACCGC GCTAAGTCGG ACTTTTTAGC CAATATGTCC CACGAGATCC GCACGCCGAT GAATGCCATT CTCGGCATGT CCTACCTAGT GCTGCAGACG GAGCTGAGCA GCAAGCAACG GGATTATGTG GGCAAGGTGC ATCAGGCGGC CGGCTCTTTG CTGGGCATAC TCAACGATAT TTTGGATTTT TCTAAAATCG AGGCCGAGAA GATGGATATC GAATGTACCG TATTCGATCT CGACGATGTG CTGTCTAACT TGGCCAATGT AGTGAGTTAC AAGGTTGAAG AGAAGAACAT GGCATTTATC TTCGATCTGC CGCCCGAGTT GCCCCGTTAC TACCATGGTG ATGGCCTGCG TCTGGGGCAA ATTTTGATCA ACTACTGCAA TAACGCGGTG AAGTTTTCCC ACAACGACAG CAGTGTGGTC TTGAGTTGTC AGACTCAGCA GCAGGGGGAG CAGGTTGAAC TCACCTTCTG TGTGGAAGAT TTTGGCATTG GGATCCCCGA GCAAAAACAG GGAGTGTTAT TTGGCTCATT CGAACAAGTC GATGCCTCGA CTTCACGGGA ATATGGTGGA ACAGGGCTGG GGTTAGCCAT TTGTAAGCGC CTAGCCCACC TGATGGGCGG CGAAGTGTGG TGCGAGAGCG AGTTAGGCGT GGGGAGCCGC TTCTATCTCA GGCTCACACT CAACTGTGCC GATACCTATG AGTCTCAGTC GCTATTCGAT GCCTTAGCGG GCGAAACCGC TAAGCTAGTC GGGCTGCATC CTAGATTGGA AAAGCTGCTC ACCGAGCATG GGCTGGCGGC TAAGATGCAG GTGGCGGTGG CCGAGACCAA TAGCGTGATT GAAGAGCTTA AACACTCGAG GACACGCCAG CTGGTGCTCT GTGATTACAG TGCATTTAGC CCTGAGTTAC TGGATGCGCT GACGGCGAAT CCCGATTCAC GTATGTTGTT GGTTGGTAAC CTTAGCGATC AGGACGCCCT AAGACCGCTG ATTGAGAATA ACCCAAGGGT GTTGTCACAA ACGAAGCCCC TGACGCCCAT CGCAATCGGC AATGCCCTGT TATCCCTGCT GGGACATAAC AATGAGAATG GCAGGCAAGT GCAGCAGGAT CATTCCTTAC ATGCCCTTAA GACTCAGCTC GCGGGGGCAG AGGTGTTACT GGTAGAGGAT AATCAGCTCA ATCAGGAGCT GGCGGTGGAG TTGCTGCACC AAGCGGGCGT GAATGTCACT GTGGCTAATC ATGGGCTTGA GGCCATAGAG CGCATCGAGC AGCAGTACTT CGACTGCGTG TTAATGGATT GCCAGATGCC GGTGCTCGAT GGTTACGAGG CGACTCGCAG GATCCGCGAA TTGCCTGAAT TTGCCAATCT GCCGATATTG GCCATGACGG CCAACGCCAT GTCAGGTGAT ATTGAAAAAG CACTGGCGGT AGGAATGAAC GACCAAATCA CTAAACCTGT GCATGTGAAG GATCTCTACA CTGTGATGGC GCGCAGGATC ACGCCAAAGC AGCGTAAATC TGTGCCCTTG GTATTAAAGC GAGCGAGCAC GGCCCATAGC TTGCCGCAGC TCGATGGCTT ACAGACTCAC AATGGTTTGG CGCTTTGCGA TCATAACGAG TCGCTCTACA GCCATTTGCT GGGCTTGTTT ATCAACACCA GCAAGACACT GCTTGGGCAG CAACAGCGAG CTTGGCAGGA TGAGAATATC GATGAGCTGC GCTTAAGCCT GCACACCTTA AAGGGCGTTG CCGCTAATGT GGGGGCGGTG GAGATCAGCC GTCAAGCTGG TGAACTCGAG CAGCAATGCC ACACGGCGCA GCAGAGTTTT ACCGTGGAGT TACACGAGCA ACTGTTGGGG CTGCAAACCG AATTACAGCG CCTAGTCACA GGCTTGGAGC TTTGGCATCA ACAGCTCAAC AGCCAGCATG AAACCACACT GGATGATGAC GCCCTAATTG GGTTGATGGA GCAATTAGAA AACAGTCTGC TGGAATACAA TACCAACGCT TTGGAATGGG TAAATAAGCT TATCCATGCG CCGCAGTTTC AGTCCCAGGC GAGTGTGCTT AAACAGTTAA AAATGGATGT TGAACTGTTT GATTTTGAAC AGGCATTAGC GCGACTGCAC ACTCTTAAAC TGGCGCAGGA GGACGTATGC AGTTAG
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Protein sequence | MAVFGISSGH LYRTIRQVLA VICCHKQQIH LGKRIASLGY VVCLVSLFAV HFGLFPNMAM ANEVSQQQYR QALSQLTPAQ KLAHSHRVSM ILESDRPFWH QIAKFAKIAA MDLNIQLDVV YGDGTPETLL KLGHEAIDNK VSGIVFVPVS GMGQELLAEA NQQHIPVVTI NSEFKQSSLS LRTQNPNWIG RVAINNTNLG QSLLEKMFEH ENSAERMNVL LLAGNKDNLD VQKRTAELKS AVNKQFANAK LKVVNTDWTA SAARDAYLKA IKQDPSINTV IAMDTTMALA VSHEAEASTL RPIPHIASLS WDYQLAQGIQ NGTIAAGVGG VEFQGAFSLV LLFDYLNGVD IRSKGAEFLI APLIISPNNY NDYYELLDFD SLQPDFARVS LALNKNLFLV DFRLGALIPN MDLHRFMSIL TVEERAFINN NPIVRVGVDP HSAPIDFIDE NGIHRGMMAD YLAEISRVVP LIFQTYNEGS WQQAVEEFKH RKVDMLSLAS AGSGREQWML FTDPLNQYPP VIVTPIEGTH FNSLESLKGK SVSVVAGDIT QNHLLDDYPD IVLVPVSNLE QALTAVDKRQ VDAAFVNFPS TAHLLQSPPF NRLQITAATD YRFGISMGVR KDWPELQSIL NKAFAQIPQD KAREIQHRWV NVQYDLGLKK QQVFNWAVRI AVAVLLVLFL FSLRNRRLNK DIAQRIHTEQ QLSLSMHKFQ ALFDSAVDAC VITDSQGVII ECNSALLSLL KYQSKDQLIG QRTLVYYPEQ SDDALNQSVF ERRLQTVLDQ GQLKFESEFI TTAAEIIHVD VTLKRIELNG SLFVLGSYHD LSERKLMNAL LERERDLLKN VLGRSPIGVW ICVEGVCRYV NEQITEMTGL EVGQSVYRIF VQPEDYRCHI RELDLSQDST VFETQLFDAH GQRRDVLLTS YHTVQDGQNA NLCWALDITD TKSIQDELAI AKDAAEAANR AKSDFLANMS HEIRTPMNAI LGMSYLVLQT ELSSKQRDYV GKVHQAAGSL LGILNDILDF SKIEAEKMDI ECTVFDLDDV LSNLANVVSY KVEEKNMAFI FDLPPELPRY YHGDGLRLGQ ILINYCNNAV KFSHNDSSVV LSCQTQQQGE QVELTFCVED FGIGIPEQKQ GVLFGSFEQV DASTSREYGG TGLGLAICKR LAHLMGGEVW CESELGVGSR FYLRLTLNCA DTYESQSLFD ALAGETAKLV GLHPRLEKLL TEHGLAAKMQ VAVAETNSVI EELKHSRTRQ LVLCDYSAFS PELLDALTAN PDSRMLLVGN LSDQDALRPL IENNPRVLSQ TKPLTPIAIG NALLSLLGHN NENGRQVQQD HSLHALKTQL AGAEVLLVED NQLNQELAVE LLHQAGVNVT VANHGLEAIE RIEQQYFDCV LMDCQMPVLD GYEATRRIRE LPEFANLPIL AMTANAMSGD IEKALAVGMN DQITKPVHVK DLYTVMARRI TPKQRKSVPL VLKRASTAHS LPQLDGLQTH NGLALCDHNE SLYSHLLGLF INTSKTLLGQ QQRAWQDENI DELRLSLHTL KGVAANVGAV EISRQAGELE QQCHTAQQSF TVELHEQLLG LQTELQRLVT GLELWHQQLN SQHETTLDDD ALIGLMEQLE NSLLEYNTNA LEWVNKLIHA PQFQSQASVL KQLKMDVELF DFEQALARLH TLKLAQEDVC S
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