| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3543 |
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| Symbol | |
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| ID | 4255849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 4199512 |
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| End bp | 4201551 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638124227 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_739580 |
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| Protein GI | 114049030 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAAGTA TGATCCCAGA AATAGGTCAC CTATTGCTCA TCATAAGTAC TGTGTTGGCA
TTATTCTCCG CCACCATTCA CTTTATTAGC ACTCATCAGC CACAGTTTTA TTTAATCGAA
TTCGGCAATA AATTATTTAA TGCCATGTTT ATAAGCTTAT TGAGCGCACT CTTATGTCTT
ATTTATGGCT TTATTATCGA TGACTTTTCG GTTGCCTATG TGGCGAACCA TTCCAATAGC
CAACTCGCCC TCGGTTATAA AATTGCCGCA GTATGGGGCA GCCATGAAGG CTCTATGCTG
TTTTGGGTGT TCGCCATCGC GTTATGGGGT GCCATCATCA GTTGCCGCCA AGCGGGTAAA
TTCGTCGACT TAGATAACGC CGATGTGCAG ACGGATAAAG CCTACTTTGC CCGGCTACTG
GCGATTCTCG CGCTCGTTAT CCTCGGCTTT AATCTGTTTT TACTCTTTAC CTCCAATCCC
TTTGCCCGAT TACTACCTAA CATCCCCATT GAAGGGCGCG ACCTCAATCC GATATTGCAG
GACATTGGCC TCATACTGCA CCCGCCTATG CTGTTTTTAG GCTATGTCGG ACTGACGGTA
TGTTTTGCCG CGGCGCTGTC ATCCCTACTG GGTGGCGCAT TAGTGCATCG TCACCTCGAA
TACTTGCGGC CTTGGGTATT ACTGGCGTGG ATTTTCCTCA CGGGAGGCAA TGCCTTTGGT
TCTTGGTGGG CCTATAACGA ATTGGGTTGG GGCGGTTGGT GGTTTTGGGA TCCCGTTGAA
AATGCTTCTT TTATTCCTTG GCTAGTCGCC ACTGCACTGG TGCATTCCTT AGTGCTGACC
AGAAAGACCC AAGGCTTTGC CCTCACCACG CTATTTTTGT GCATCTTGGC ATTTTCGCTG
AGTTTACTCG GCAGCTTTTT GGTGCGTTCC GGCATAGTGC AATCTGTGCA TGCCTTCGCA
GCAGATCCCA CCAGAGGCAT GTCAATCCTA TGTTTATTGG TGCTGTTTGT CGGCGCGGCG
CTGCTGATTT TTGCACTCAA AGCCCAAGCC TTGAAGCATG AGGTCAGCCC TAGCCTATTG
AGCAAAGAGA CACTGTTACT GCTTGGCATC ATAGTATTGG TGGTTGCAGC CTTTTCCGTT
CTGCTGGGCA CCTTTTATCC CCTGCTATAC CAGCTGCTAG GCTTAGGCAC TATGTCGGTC
GGCGCCCCTT ACTTTAATGC GATTTTTGTC CCACTGACCT TTATCGCGGT GACGCTAATG
GGCATAGCGC CGTTAATTGC TTGGGGACAA TCGCGCGGCA AACCACTCAA GGTATTAGCC
TTGCCTTCTA TCGCCATTGT GATTATCGCG GCGCTAATGA GTTATCAAAC CCAAACCGAT
GGTGTTCTCT TCCTATTCCT TGGCTGCGCC AGCGCGTTGT TTTTGCTCTG TTGTCTTGGG
GTGAGTGTAA CAGTGACATC CAAAGCATTG ACGCCACCTA AGCCCGCCAT ATTGACAACA
TCAAAGCGCG CCAGATTAGC CATGCTAGTC GGCCATTTTG GTGTGGCGGT CAGCATTATC
GGCGCGACCT CGGTATCGTT TTTCGAGCAG GAAGCCCTGC TGCGTATGGG GCCGGGCCAA
GGTAAACCAC TTGCCGATTA TGTGCTGGTG TACGAAAGCA CAGAACCTGT AGAAACCCCA
AGTTTTAGCG CGATTCAAGC CAATATCAGC ATTCGCGCAG CCAAGCAGGA TGATGTTGTA
CTGGGTTACC TCCATCCACA GCGACAAACC TTTCATAGCA ATGGCATGGA AGTGTCCCAT
GCGGGCATAG ACCACGGTTT TTGGCGCGAT CTCTATGTCT CTATGGGGCT ACAACTGAGC
GACACCGAAT ATCTGATCCG CATTAGCTAT AAGCCCTTAG CGACCTGGAT TTGGCTGGGT
GCTTTATTGA TGATGCTTGC GGGCGCTATT GCCGTTTGGC CAATCAAACA AGGCCACAGA
GTCGCACAAA CAAAGGCGCT GAATGTAAGT CGCTCACCAC AGGAGACAAT GACGTTATGA
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| Protein sequence | MISMIPEIGH LLLIISTVLA LFSATIHFIS THQPQFYLIE FGNKLFNAMF ISLLSALLCL
IYGFIIDDFS VAYVANHSNS QLALGYKIAA VWGSHEGSML FWVFAIALWG AIISCRQAGK
FVDLDNADVQ TDKAYFARLL AILALVILGF NLFLLFTSNP FARLLPNIPI EGRDLNPILQ
DIGLILHPPM LFLGYVGLTV CFAAALSSLL GGALVHRHLE YLRPWVLLAW IFLTGGNAFG
SWWAYNELGW GGWWFWDPVE NASFIPWLVA TALVHSLVLT RKTQGFALTT LFLCILAFSL
SLLGSFLVRS GIVQSVHAFA ADPTRGMSIL CLLVLFVGAA LLIFALKAQA LKHEVSPSLL
SKETLLLLGI IVLVVAAFSV LLGTFYPLLY QLLGLGTMSV GAPYFNAIFV PLTFIAVTLM
GIAPLIAWGQ SRGKPLKVLA LPSIAIVIIA ALMSYQTQTD GVLFLFLGCA SALFLLCCLG
VSVTVTSKAL TPPKPAILTT SKRARLAMLV GHFGVAVSII GATSVSFFEQ EALLRMGPGQ
GKPLADYVLV YESTEPVETP SFSAIQANIS IRAAKQDDVV LGYLHPQRQT FHSNGMEVSH
AGIDHGFWRD LYVSMGLQLS DTEYLIRISY KPLATWIWLG ALLMMLAGAI AVWPIKQGHR
VAQTKALNVS RSPQETMTL
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