Gene Shewmr7_3500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3500 
Symbol 
ID4258220 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp4144083 
End bp4146191 
Gene Length2109 bp 
Protein Length702 aa 
Translation table11 
GC content47% 
IMG OID638124185 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_739538 
Protein GI114048988 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTACTA AAGACATTTT TCGTGTATCC CTTATTCAAA TCGCCATCTT AAGCGTGTTT 
ACTCAAACAG TTTATGCCGA AGAATCCACG CCTAATATCG AACACCTCGA AGTCAAAGGT
ATTCGCCAAC CATTTCGGGG GGATGTGCCA CTGAAAGCTC AGCCACAGGC GGTAGAAAGC
CTGTCGATGG AGCAAATTAG CGATGCGGGG ATATCGACGC TGATGGATGC ACTGGATTTA
TCGAGCTCAG TCAATCGCCA AAATAATTTT GGTGGTATGT GGGACAGTTT CGCCGTGCGC
GGCTTTGTGG GCGATGAAAA CGTCCCCTCG GGTTATCTAG TTAATGGTTA TGATGCGGGA
CGTGGTTTTG GTGGTACCCG TGATACTGCG AACGTAGAAA GTATCGAGAT CATGAAAGGC
CCAGGTTCTG CTCTTTATGG CCGCGCAGAA CCCGGCGGCA CCATTAACAT CATCACCAAA
AAACCTAAAT TCTTCCAAGA AGGCTATCTG CAAGCCAGTG CCGGTCGCTG GGATAATTAC
CGTCTTGAGG GGGATTATAC TAACGCCATT ACCGACGATT TAGCCTTTAG GGTTAACGGT
GCGATTGAAG ACAAGGGCAG TTTCCGCAAT CCCGTTAATT CGGAAAAAAG GATTTTAACC
CCTTCTTTGC TTTGGGTAGC TAGTGATACC ACGCGTCTAA GCTATGAACT GGAATATACA
AACCAAAAAG TCCCCTTCGA CCGTGGCATT GTGGCTATCG ACGGCGACAT TAAAGCCTTA
CCCATTGATA GATATCTAGG TGAGGCCAGT GATGGCGCGA CCCAAATTGG TCTATTAGCC
CACCAATTTA CCTTAGAACA TGACTTTGGT AACTGGAGTT TATTATCGGG TATTAGCTAC
CGCGACACAG GACTTGAAGG CTACGCAAGC GATCCAGAGT TGGTGAAAAG TCGTCAAATG
CTCAACATCG ACGGTGAAAC CCTAAGCCGT CAACATAACT ACCGTAACTT CACCTCAACT
GACTTATCGG GTCGCGTTGA GTTAAGCGGC AAGGTCGAGA CCGGTGATAT TAGCCACCAC
CTTCTCATTG GCGCAGACGG TTATCACTTC CATTTCGACA AATATTGGGA GCGCTTCCGC
CCTGCAGCTG GCGATACGAC TTACAGCATC AATGTTTACA ATCCAGTGTA TGGACAAATT
GCGCCCGAAG GCGCCCTGCT CTACAACCAG GTAGAGACTC AGGATAACTA CGGGATCTAT
TTGCAAGATC AACTCGATCT CAGCGAAAAA TGGAAGCTCA CCTTAGGTGG CCGCTTTGAC
AGTTTCGAGC AAAGCATTGA AAACCATAAA AATCAGACAG AATCCAATCA AACCCAAAAT
GTCTTTAGTC CAAGAGCTGG TATCGTTTAC GAATGGCAAC CTTGGTTAAG CCTCTATGGC
AGTTACTCTG AAGGTTTTCG CCCTAACACA GGTTCTGATT ATCGCGGTGT CGCATTCGAA
CCCGAAGAGA GTAAATCCTA TGAGCTAGGT ACTAAGTTTG AGTTAGAAAA TCTGACAGGC
TCTATCGCCC TCTTCCGCGC CGAAAAGAGT AATGTGCTAA CTGCAGACCC TGTGAATTCA
GGTTTTTCAG CGGCACTAGG TAAAGCCGAT AGCCAAGGGA TTGAGCTGGA TTTGGCAGCC
TACCTAACGG CCGATACTCA GCTGTTGCTA TCCTACGCCT ATACCGATGC CAAGACGGCT
AACGATATTC TCAACGCAGA TTGGGGCGTG AGCATTCCCG AAGGCAGTCG TTTAATCAAC
ATCCCAAAAC ACAATGGTCA TCTCACGCTA AAACATGATA CTTCATTGTT TGGTTCCGAT
GCCTCCGCGG GAGCGACATT GCTTTATGTG GGCGATCGCT TAGGTGAAAC CATTGATCCA
AACTACATAC TGCCGGCATA TACCTTAGTG AATTTATTTA GCACCTACGC GTTAAATCAG
GATCTTAGCC TGCAATTTAA TATCACTAAC CTATTCGACG AAGTTTACTA TCAAAGCTCT
TATTCATCGA TGTGGACTAT GCCTGGCGAG CCACGCAGCT ACAAAGTCAG CGTGCGTTAT
AATTTCTAA
 
Protein sequence
MSTKDIFRVS LIQIAILSVF TQTVYAEEST PNIEHLEVKG IRQPFRGDVP LKAQPQAVES 
LSMEQISDAG ISTLMDALDL SSSVNRQNNF GGMWDSFAVR GFVGDENVPS GYLVNGYDAG
RGFGGTRDTA NVESIEIMKG PGSALYGRAE PGGTINIITK KPKFFQEGYL QASAGRWDNY
RLEGDYTNAI TDDLAFRVNG AIEDKGSFRN PVNSEKRILT PSLLWVASDT TRLSYELEYT
NQKVPFDRGI VAIDGDIKAL PIDRYLGEAS DGATQIGLLA HQFTLEHDFG NWSLLSGISY
RDTGLEGYAS DPELVKSRQM LNIDGETLSR QHNYRNFTST DLSGRVELSG KVETGDISHH
LLIGADGYHF HFDKYWERFR PAAGDTTYSI NVYNPVYGQI APEGALLYNQ VETQDNYGIY
LQDQLDLSEK WKLTLGGRFD SFEQSIENHK NQTESNQTQN VFSPRAGIVY EWQPWLSLYG
SYSEGFRPNT GSDYRGVAFE PEESKSYELG TKFELENLTG SIALFRAEKS NVLTADPVNS
GFSAALGKAD SQGIELDLAA YLTADTQLLL SYAYTDAKTA NDILNADWGV SIPEGSRLIN
IPKHNGHLTL KHDTSLFGSD ASAGATLLYV GDRLGETIDP NYILPAYTLV NLFSTYALNQ
DLSLQFNITN LFDEVYYQSS YSSMWTMPGE PRSYKVSVRY NF