Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3487 |
Symbol | |
ID | 4255441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 4130247 |
End bp | 4132400 |
Gene Length | 2154 bp |
Protein Length | 717 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638124172 |
Product | multi-sensor signal transduction histidine kinase |
Protein accession | YP_739525 |
Protein GI | 114048975 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACATGG ATAGTTTCCC CGATTCTTTC AGCCCCTCAA AAAATGTTTA TGCCAGCGTA ATCAGTTCCA GTTGGTTGAT GTTACTCGCC GCCGTTTTTT TTATGGGGAT ATCCTGGTAT GTCCTCGAAG AATATTTACG AGACCGGGGT GAAGAGCGTT TTAACAATAA TGTTCAAGAT CTTATTGCTG CCGTCAGCAG TCGCATGACC GCCTATGAGC AAGTATTACG CGGTGGAGTT GGATTATTTC TGGCCTCTGA TGGGGTGACG CGCCATGAAT GGCAACTCTA TGTTTCTAAT GCCCGCTTAA CCGAGTATTA CCCAGGAGTT CAAGGTCTAG GCTTCGCGCA GCTCTTAACT ACAGCCAACT TAGATTCCTT TACGCAAGAG GTGCAACAGG AAGGTTTTAG CGATTATCGA GTCACTCCCA CAGGTGAGCG GGAGTTCTAC TGCGCCATCA AATATCTAGA GCCATTTGAC TGGCGCAATC AAAGGGCATT TGGTTTTGAC ATGTGCTCAG AGCCTACCCG CAGAACGGCC ATCTTACATG CCATTGCCAC AGGGCTTCCT ACCGCATCGG GTAAGGTCAC CTTAGTGCAA GAAACCCCGG ATGATGCTCA GGCCGGCATT TTAATGTATG TCCCTTTATA CCATGGTCAG CCGATAACGG AGGAAGAACG TAAACAACAG GCCATAGGCG TTGTTTACGC CCCATTTCGT ATGAACGACC TGATGCAAGG CATTATGGGA AAACGCTTTT CGGGCTTAAA ATTGGCGATT TACGATGGGA TTGAGGCTAA CAAGGATACT CTGATGTTTA CTAGCCACAC CGCACTCCCT TCCGCAGATG ATGTTTTTTA TCAATCCCAG TTAGAGACAA TGGAAGGTCA AGTATGGCGT TTGGAAGTGT CCTCTGAATC ACGATTTATC TCGAGCTCTG AACAAACGCA AAGCATATGG TTACAGATAA TTGGAAGTGC GTTTATTTTA GTCCTGTTCT ACTCAGTGCT AACTATGGCG CGAAATCGCT ATCAAGAATC TCGATTAACG GCAGAGTTAA TCGCTAACGA AAAACGCTTT CGCCTCGTCA TTGAAGCTTC GCCGAGTGCG CTTTTTATGG TGGATAGGAC GGGCATTATT ACCTTAGTTA ATACCCATGC TGAACGCTTA TTTGGTTATG CAAGAGATGA GCTGCTCGGC CGTTCGATCA ATATGTTACT TCCCGAAGCG CTGAGAGATG TGCATCAACA GCATATGGGG AATTACCTGG TTCAGCCGAT TGCGAAAAAT ATGTCACTAC GGGATGACTT GTTTGGCTGT TGTAAAGATG GGACGCGCCT AGCGATTGAA GTTGGGTTGA CACCTATCCA CTTCAGCAAT GGGGTGTCGA TTCTGGCGAC CATTAACAAT GTGTCGGAGC GTAAGCGGAT TGAAGCGCAG CGCATTGAAC ATACCGCTGA ACTTGAGCGC ATCAACAAGG AACTTGACCA GTTTGCCTAT ATTGCCTCTC ACGATCTGAA ATCACCTCTG CGTGGCATAG AGCAATTAAC TAACTGGTTA AGTGAAGAGC TAGCCGAAAA CACCGATGAA AATATCCAAA AATATCTAGG GTTAATCCAA AGCCGTATTC AACGTATGGT TCTACTACTC GACGGGTTAT TGATGTTTTC GCGTATTGGG CGGGTTGATG CAGAGCGAGT TGAAGTCGAT TCGCGGCAAC TGATCGAAGA CATGTTTGCC TTAGTTGCCC CGCCGCAGGG GTTCAGCTTA GCTCTTGAAG GGAATTTCCC AAGGTTTAAG ACAGTGAAAA CCTTGTTAGA ACTGGTGATT AGAAACTTAA TCAGCAATGC GATTAAACAC CACGATAAGG GCGAAGGCGT CATCAAAGTG ATATGTGAAA CCTCGAATCA TCATTATTTG TTTAGCGTGA TTGATGATGG GCCAGGGATT TCTAGCCGTT TTCATGGGAA GGTATTCCAA ATGTTCCAGA CCCTTAGACC AAGAGATGAA GTCGAAGGCA GTGGTTTGGG ACTCTCTTTA GTTAAAAAGA CAGTAGAAAG TCTCGGCGGA AAAATTCAAC TAGAATCAGA GGGGCGAGGT TGCTGTTTCA GATTTAGCTG GCCAATGCAC ATAGTCAACA AGGAGGGGAT ATGA
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Protein sequence | MDMDSFPDSF SPSKNVYASV ISSSWLMLLA AVFFMGISWY VLEEYLRDRG EERFNNNVQD LIAAVSSRMT AYEQVLRGGV GLFLASDGVT RHEWQLYVSN ARLTEYYPGV QGLGFAQLLT TANLDSFTQE VQQEGFSDYR VTPTGEREFY CAIKYLEPFD WRNQRAFGFD MCSEPTRRTA ILHAIATGLP TASGKVTLVQ ETPDDAQAGI LMYVPLYHGQ PITEEERKQQ AIGVVYAPFR MNDLMQGIMG KRFSGLKLAI YDGIEANKDT LMFTSHTALP SADDVFYQSQ LETMEGQVWR LEVSSESRFI SSSEQTQSIW LQIIGSAFIL VLFYSVLTMA RNRYQESRLT AELIANEKRF RLVIEASPSA LFMVDRTGII TLVNTHAERL FGYARDELLG RSINMLLPEA LRDVHQQHMG NYLVQPIAKN MSLRDDLFGC CKDGTRLAIE VGLTPIHFSN GVSILATINN VSERKRIEAQ RIEHTAELER INKELDQFAY IASHDLKSPL RGIEQLTNWL SEELAENTDE NIQKYLGLIQ SRIQRMVLLL DGLLMFSRIG RVDAERVEVD SRQLIEDMFA LVAPPQGFSL ALEGNFPRFK TVKTLLELVI RNLISNAIKH HDKGEGVIKV ICETSNHHYL FSVIDDGPGI SSRFHGKVFQ MFQTLRPRDE VEGSGLGLSL VKKTVESLGG KIQLESEGRG CCFRFSWPMH IVNKEGI
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