| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3442 |
|---|
| Symbol | |
|---|
| ID | 4255449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 4078888 |
|---|
| End bp | 4079772 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638124127 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_739480 |
|---|
| Protein GI | 114048930 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCCAGA CCGCTAAACC TTCGGGATTA ATCGAATTAC ACTTAGCTGT GCTGATGTTT
GGCGGCACAG CTTTGTTTTC CAAGTTAATT CCTTTAAGCG CACTCGATAT CACCTTCCTA
CGATGTGTTG TCGCGGCCTT GGTGTTGGCA CTACTCATCA AATTCCGTGG TAAATACTTA
AGCCTTGCCA GCAAGCAGGA TTATCTGGTT GCTATCGGCT TAGGTGTGAT AGTCAGCTTA
CACTGGGTCA CCTACTTTGC CGCGATGCAA CTCTCATCGG TCGCTATCGG CATGATTGCA
TTCTTCACCT ATCCGGTGAT GACAGTTATT GCCGAGCCGT TATTAACTGG CAATAAAATC
AAGCTGATGG ATATTATCAG CGGTGTTTTG GTGCTGATAG GTGTAGTGCT ATTGATCCCC
GAAGCCAATC TTGGCAACGA TACAACCTTA GGGATTGTGG TCGGGATCGT CTCGGCGATG
TTATTTACCG CCCGTAACTT ACTGCAAAAA CGCTTTTTTT CCCAATATAG CGGCCCCCAC
GCCATGTTTT ATCAGACCTT AGTAGCGGCG GTGTTTCTTA TGCCTTGGCA TCAAACCGAG
TTACAGACTA TCTCCCTCGA GACCTGGGGC TTGATTGTGC TGCTCGGAGT GGTATTTACC
GCGGCGCCCC ATGCACTCTT TACCTCGGCA TTACGCCAAT TAAGCGCTAA AACCGTCGGG
TTAGTCTCCT GCCTACAACC CTTCTACGGG GCCATGTTGG CATTAGTGAT CTTAGGCGAA
GCGCTGAATC TCAACACCCT GATAGGCGGA ACCATCATAG TCACCACCGC CATCTTCGAA
ACCCATCAAT CCCACCAGTC ACAACGGCGA AAAAAGAACG TCTGA
|
|---|
| Protein sequence | MSQTAKPSGL IELHLAVLMF GGTALFSKLI PLSALDITFL RCVVAALVLA LLIKFRGKYL
SLASKQDYLV AIGLGVIVSL HWVTYFAAMQ LSSVAIGMIA FFTYPVMTVI AEPLLTGNKI
KLMDIISGVL VLIGVVLLIP EANLGNDTTL GIVVGIVSAM LFTARNLLQK RFFSQYSGPH
AMFYQTLVAA VFLMPWHQTE LQTISLETWG LIVLLGVVFT AAPHALFTSA LRQLSAKTVG
LVSCLQPFYG AMLALVILGE ALNLNTLIGG TIIVTTAIFE THQSHQSQRR KKNV
|
|---|
| |