| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3426 |
|---|
| Symbol | |
|---|
| ID | 4256698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 4061368 |
|---|
| End bp | 4062066 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638124107 |
|---|
| Product | cytochrome c1 |
|---|
| Protein accession | YP_739464 |
|---|
| Protein GI | 114048914 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2857] Cytochrome c1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0003058 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.104383 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT TACTGATTGC ATTAGTTACA TTGCTCCCGA CGCTGGCGAT GGCCGCGAGC
GGACACAATG TACATTTAGA AAAAGCCAAT GTTGATTTGC ATGATAAGGC TTCTTTAGAG
CGTGGTCTGG ATATGTTCCA ACACTATTGC TCTGGTTGTC ATAGCACTCA GTATCAACGC
TATGAACGTG TGGCAAACGA TCTCGGTATT TCTGCCGATG ATATGCGTAA CAAGTATATG
TTTACCGATG CTAAAATCGG TGAGCTGATG CAAAACGCGA TTCCACACAA AGATGCGGCT
AAATGGTTTG GTGCAACACC ACCAGACTTA ACCTTAGTAG CACGTGTTCG TGGCGAAGAT
TGGGTGTATT CATACCTCAA AGGCTTCTAC AAAGACCCAA GCCGTCCATT CGGCGTCAAC
AATACTGTCT TCCCATCAGT GGGTATGCCA CACGTTCTTG AAGAACTGCA AGGCACACCT
GTTAAGCAAG AAGATGGCAC TATTGTGGTC TCAGGTGGTA AGTTAAACGC AGAAGAGTAC
GACCAAGCAG TTCGTGATAT CACTGGCTTC TTAGTCTATT CGGCTGAACC TGTTAAGTTA
GAGCGTCAAG CGCTAGGTTG GTGGGTGCTC GGATTCCTGT TTATCTTCTT TATTGTGGCC
TACCTCTTGA AGAAAGAGTA CTGGAAAGAT GTACACTAG
|
|---|
| Protein sequence | MKKLLIALVT LLPTLAMAAS GHNVHLEKAN VDLHDKASLE RGLDMFQHYC SGCHSTQYQR
YERVANDLGI SADDMRNKYM FTDAKIGELM QNAIPHKDAA KWFGATPPDL TLVARVRGED
WVYSYLKGFY KDPSRPFGVN NTVFPSVGMP HVLEELQGTP VKQEDGTIVV SGGKLNAEEY
DQAVRDITGF LVYSAEPVKL ERQALGWWVL GFLFIFFIVA YLLKKEYWKD VH
|
|---|
| |