| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3409 |
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| Symbol | |
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| ID | 4254675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 4041872 |
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| End bp | 4044058 |
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| Gene Length | 2187 bp |
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| Protein Length | 728 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638124090 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_739447 |
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| Protein GI | 114048897 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0505297 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.623835 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGATG GTTTAGCAAA TCCACTCCAA CAGGCATTAG TGACGATTTT TAGCGAAACG
CCGCTAGAAA CCCTAGAGCA AAATGTTGAT CAAGCCCTAG AGGCCATCAC GCTGCAGTTG
CATTGTGATG GCGTATTTGT GCTGACGGGT AGTTTAGCCC TAGACCATCT ACGTACCCGT
AATCTGTACT TAAAACCGCA ATTTAGCCAG GGCCAACAGG CGCGTGTTTG GCCGCTCGCG
CGTATGCCGT TTTTTCGCTC CTTAGTGAGA ACCCCCACAC TGCTGAATCT TCCCGATGTC
GATACCTTGC CCGCAGAGGC CCAAGCGGAG CGGGCGTTAC TTCGTGATTG GAACGTTAAA
AGCCTATTGG TGTTACCGCC TGTGGTGTTT GGCGAAACCC GTATCGCCCT TGGCGCGGTC
AATTGTTCCG AATGCTGTGA ATGGAGTGCG GAGTTTATTC GGGAGTTTCA ACATGCGGCA
GTGATGATTG GCTCGGCGAT GGAACTGACC CGTATCGCCC ACGATATGTT GGCCAGTGAG
CACAAATATC GCGAAGTCTT TAATCAATTG CCTTTAGCCT GCGCCCTGCT TGATAAACAG
AACCAACTGA CCATGCTGAA TAAAGTCGCG TTGCAAACCC TGCCGGTGCA GCATGGATAC
GATTTATTTA GCATGGTGCG CGAAGAGGAG CATGCCATGC TTACCGACAC GCTGCACATG
GTGCGCGAAG GCGTATTGGG GCAAGCCTGG TGTGAGTTAC CCTTAAAATC TAACCTGCAG
TTGGATTGGC TGAGGCTGAG CTTTAGCCAA ATCCACGGCA ATAAAGACAC CCTAGTGATG
ATTGCCGAGG ATGTTAGTGA AAAATATCGC CTCGCCGATG AGCTGTCCTT CCATGCCAAT
TATGATGCTT TGACTGGGTT ACCGAATCGG TTGCATTTTG AGGCCTTGCT CGACAACCTG
CTGCAAACCA AAGATGAGAT GCCCACCTGC GTTGCCTTTA TCGATGTCGA TCAGTTTCAG
GTGATCAACA ATGTGAGCGG CCATCAAGCC GGTGATAAAT TACTGTGCCA GCTTGCATTA
CGTCTCAAGC AATTGGTGCG TAAGGGCGAT ATTGTCGCGC GTTTGGGCGG CGATGAGTTT
GGGATTTTAA TGCATTATTG CAATGTGGAT TCGGCGCAGC ATATTGCTAA TCGGATCTGC
ACTCAGTTAG CGACCCACGA GTTTATTTGG GAAAACCGTT GCCACAATGT CAGTGTCAGC
ATGGGGATCG CTAAGCTCGA AAAGTCTGCG ACGGATATTT ACACTGTGAT GAGTCAGGCC
GATGCGGCCT GTCGTCTTGC CAAGGATAAG GGCCGCAATG GCTGGCACTT GTACAGTGCC
AAAGATCCTA AAATGACCCG ACTGTATACC GAGATGATGG CCTCAGTCGA TATCGTTAGC
GCCCTCGCGC TAAATCAATT TGAGCTGTAT TTCCAAAGCA TTGCCCCGTT AAGTCGCGAA
GAATCCGGCC TGCATTTAGA GGTGCTGCTG CGGATGGTGC AGGCCAATGG TACTATTGTT
TCGCCGGCGA TCTTTCTCCC CGCGGCGGAG CGTTACAACT TGGCGGCCAA GGTCGACTTG
TGGGTGATAG ATAATCTACT GAAGTGGGGC AGTAGCCATT TGGATATTTG GCAACAGCTG
GAGTTGGTCT CGGTCAATCT GTCGGCGACC TCCTTAGGTG ACAGCGAGTT TATGAATTGG
CTCGAAATGC GCCTGATGAC CGAACCTGAG CTGGTGGATA AGCTCTGCAT AGAGATCACT
GAAACCGCCG CGGTGAGCCA ATTAGATCAG GCCACTAAAT TGATTGAAGT GCTGAGGCCA
TTAAATTGCC AACTCGCGTT AGATGACTTT GGCGCGGGGT TCTCAAGCTT TGCCTACCTT
AAACGCTTGA ACGTGGATTA TGTCAAAATC GACGGCCAGT TTGTGATTAA TCTGTGTGAG
GATGAGGCCG ACCAAGCCAT CATCAAAGCC ATTTGCCAGT TAGGGCAAGA TATGGGCTTC
GATGTAGTGG CGGAGTTTGT TGAATCCACC GAAATTGCCA CTAAGTTAAA AAGCCTAGGC
GTGGATTATG CCCAAGGTTA TGCCATCAAC AAGCCTATGC CGTTACTGAC CTTAACCTCT
GGCTTGGCCG AACCTTGGTT ACGCTAA
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| Protein sequence | MSDGLANPLQ QALVTIFSET PLETLEQNVD QALEAITLQL HCDGVFVLTG SLALDHLRTR
NLYLKPQFSQ GQQARVWPLA RMPFFRSLVR TPTLLNLPDV DTLPAEAQAE RALLRDWNVK
SLLVLPPVVF GETRIALGAV NCSECCEWSA EFIREFQHAA VMIGSAMELT RIAHDMLASE
HKYREVFNQL PLACALLDKQ NQLTMLNKVA LQTLPVQHGY DLFSMVREEE HAMLTDTLHM
VREGVLGQAW CELPLKSNLQ LDWLRLSFSQ IHGNKDTLVM IAEDVSEKYR LADELSFHAN
YDALTGLPNR LHFEALLDNL LQTKDEMPTC VAFIDVDQFQ VINNVSGHQA GDKLLCQLAL
RLKQLVRKGD IVARLGGDEF GILMHYCNVD SAQHIANRIC TQLATHEFIW ENRCHNVSVS
MGIAKLEKSA TDIYTVMSQA DAACRLAKDK GRNGWHLYSA KDPKMTRLYT EMMASVDIVS
ALALNQFELY FQSIAPLSRE ESGLHLEVLL RMVQANGTIV SPAIFLPAAE RYNLAAKVDL
WVIDNLLKWG SSHLDIWQQL ELVSVNLSAT SLGDSEFMNW LEMRLMTEPE LVDKLCIEIT
ETAAVSQLDQ ATKLIEVLRP LNCQLALDDF GAGFSSFAYL KRLNVDYVKI DGQFVINLCE
DEADQAIIKA ICQLGQDMGF DVVAEFVEST EIATKLKSLG VDYAQGYAIN KPMPLLTLTS
GLAEPWLR
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