Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3407 |
Symbol | |
ID | 4254673 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 4036983 |
End bp | 4039490 |
Gene Length | 2508 bp |
Protein Length | 835 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 638124088 |
Product | ATP-dependent helicase HrpB |
Protein accession | YP_739445 |
Protein GI | 114048895 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.982669 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAACAATC TACCCATTCA TTCCTTATTG CCATCCCTGC GCGATGCCTT TGCGAAACAT GCGCAAGTGA TCCTCGAAGC GCCAACGGGT GCGGGTAAAT CGACCGCATT GCCCTTAGCC ATGCTGGATT GGCCTGAGAT TTCTGGGCGG ATTTTAATGC TGGAACCTCG ACGTGTTGCT GCCCGTAGCG TGGCGCAATT TATTGCCAGT TGTCGGCAAC AGGCGGTAGG GCAAGAGGTA GGTTATCGCG TGCGCGGCGA GTCAAAGGTC AGTGGTGAAA CTCGACTTGA GATTGTCACC GAAGGGATTT TAACTCGCAT GATCCAGCAA GATCCTGAAT TAACAGGCAT CGAGATGATC ATTTTCGACG AGATCCACGA GCGGCATTTG ACCACAGATC TCGGTTTAGC CTTGGCGCTC GAAGTGCAAA GCTCGCTGCG GGATGACTTG AAAATCCTCG CCATGTCGGC AACCTTATCT GGCCTGACAT TGGCTGAGTT GATGCCCGAT GCCGCTCTGC TACAGAGTGA AGGGCGCAGT TTCCCGGTCG ACATTCGATA TCGTCCCGTT GCTGGGCAGC AGCATTGGCT CGATCATCTT AGCCGCGTTG TACTCGATGC CGCGACATCA TTAAGTGATA ACGGCCCGCA GGATATTTTG GTGTTTTTGC CCGGTAAAGC CGAAATCCTT AGAGTGGCGC AGTATCTAGA AGAGCGCCTC GATAACAGTC GCGTGACGGT GTGCCCACTC TATGGCGAGC TGTCGGCGCA GGAGCAGGAC AGGGCGATAA AGTCCGACAG CAGTAGGCGC AAAATTGTGC TCTCCACCAA CGTGGCCGAG TCGAGCCTGA CCATCGAGGG CATTGGCCTT GTTATCGACA GCGGTTATAA ACGCCAAGCC AGTTTTAATC CTAAAACTGG GGTGACACGT TTAAGCCTTA AGCGCATCAG CCAAGCCTCG GCAACCCAGC GTGCTGGCCG TGCGGGGCGT TTGGCGGCGG GCGAGTGCAT CCGTTTATGG GGCCAAGAGG AGCATCAACG TCTACTCAAG GCCGATGAGC CCGAAATCAG CCAAGCCGAC TTAGTCGCCA TGGCCCACGA CTGTGCCTAC TGGGGCGCGA AATCCTTCAG CGACTTACTG TTATTGACTG CGCCGCCCAC GGTGAACGAG GCATTAGCTT GGCAACTGCT TCAGCGTTTA GGCATGGTCG ATGAACAAAA CAAGCTAACT GCGCATGGCA AAGCTGCCTA TGAGCTGGGG TGTCATCCGC GCCTCGCCCA TATGTTATTG GTGGCCAAAT CTCGCGATGA ACATCAACTG GCGGCCTTAG CCTGTTTACT GGCGGGGATT TTAGAGGCGC GAGGATTGCC ACGCAAAGGC GCCGATATCA TGAATTATCT GCACTTTGCC ACCCAAGGCA GTGCGGGGCA GCAGGCCAAA CAATGGCTTA AAAAGCTGGC GCTAGATAAG CAATTTACTC AGGCCGATTT AGTGGCCATC GCCTCCCATG CCCATCATCA GGATGTCGGT TTGCTGTTGG CGCTGGCTTA CCCCGACCGG ATTGCCAAAT CCCGTGGCGT TGAGGGGTAT CAATTGGCCA ATGGTACGGG TGTGGTGCTC AACGCCGAAG ATGCCTTAGC GCAAACGCCT TGGTTGGTGG TGGCGGATTT TCAAGAAACC GAAGGCAAGA ATGCCGGGCG GATTTATCTC GCCAGTCCAT TATCGCCAAG TCTGTTCGAT GAGGAATTGG CCGAGCTGGT GGAGCGCCAT GACCAATGCG GCTGGGATGA AGCCAAAGGC CGCGCGGTGG CCGAGCGCCA AACCAAAGTC GGGCAGATTT TACTGAAATC AGAGGCTATT GCTAATCCGA ATCGCGGCCA AATTGTGGCG GCATTGCTGA GTTACATTCG TCAGCAGGGG TTACAAATCC TTAATTGGCA CGATAACTTA GCGCAGTTTC AGGCTCGATT ACAGTTAGCG CGCGATTTAG ATCCGAATGC CGATTGGCCG GATATGAGCG ATACCGCGCT GCTGGCAAAC CTTGAAACAT GGCTGGCGCC CTACCTTGAA AATGTGAATA ATCTGCCGCA ATTACAAAAA CTCGATTGCT TTAGTTTGCT GGTAAACCAA TTAACTTGGT CACAGCAGCA GGCGCTCGAT GCGCTGTTGC CCACCTCATG GCCGTTAGCC ACGGGCACCT TCGCGCCGAT ATTGTACGAT GCCTCGGGGC GAGCCTTGCT GCGGGTACGT TTGCAGGAAA CCTTTGGCAT GGCTGACAGT CCGCTACTGG CCCAAGGTAA GCTTAAGGTG ACGATGGAAT TGCTGTCACC GGCGCAGCGC CCCTTGGCTC TAACAGCGGA TCTCGCCAGT TTTTGGCAAG GGCCCTATGT GGAAGTGAAA AAAGAAATGC GTGGGCGTTA TCCTAAACAC CTGTGGCCGG ACGACCCTGC CAATACGCAG CCCACAAAAT TTACCAAGAA GAAAACCTTA GGTTTATCTC AGTCATAG
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Protein sequence | MNNLPIHSLL PSLRDAFAKH AQVILEAPTG AGKSTALPLA MLDWPEISGR ILMLEPRRVA ARSVAQFIAS CRQQAVGQEV GYRVRGESKV SGETRLEIVT EGILTRMIQQ DPELTGIEMI IFDEIHERHL TTDLGLALAL EVQSSLRDDL KILAMSATLS GLTLAELMPD AALLQSEGRS FPVDIRYRPV AGQQHWLDHL SRVVLDAATS LSDNGPQDIL VFLPGKAEIL RVAQYLEERL DNSRVTVCPL YGELSAQEQD RAIKSDSSRR KIVLSTNVAE SSLTIEGIGL VIDSGYKRQA SFNPKTGVTR LSLKRISQAS ATQRAGRAGR LAAGECIRLW GQEEHQRLLK ADEPEISQAD LVAMAHDCAY WGAKSFSDLL LLTAPPTVNE ALAWQLLQRL GMVDEQNKLT AHGKAAYELG CHPRLAHMLL VAKSRDEHQL AALACLLAGI LEARGLPRKG ADIMNYLHFA TQGSAGQQAK QWLKKLALDK QFTQADLVAI ASHAHHQDVG LLLALAYPDR IAKSRGVEGY QLANGTGVVL NAEDALAQTP WLVVADFQET EGKNAGRIYL ASPLSPSLFD EELAELVERH DQCGWDEAKG RAVAERQTKV GQILLKSEAI ANPNRGQIVA ALLSYIRQQG LQILNWHDNL AQFQARLQLA RDLDPNADWP DMSDTALLAN LETWLAPYLE NVNNLPQLQK LDCFSLLVNQ LTWSQQQALD ALLPTSWPLA TGTFAPILYD ASGRALLRVR LQETFGMADS PLLAQGKLKV TMELLSPAQR PLALTADLAS FWQGPYVEVK KEMRGRYPKH LWPDDPANTQ PTKFTKKKTL GLSQS
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