Gene Shewmr7_3407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3407 
Symbol 
ID4254673 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp4036983 
End bp4039490 
Gene Length2508 bp 
Protein Length835 aa 
Translation table11 
GC content54% 
IMG OID638124088 
ProductATP-dependent helicase HrpB 
Protein accessionYP_739445 
Protein GI114048895 
COG category[L] Replication, recombination and repair 
COG ID[COG1643] HrpA-like helicases 
TIGRFAM ID[TIGR01970] ATP-dependent helicase HrpB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.982669 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAACAATC TACCCATTCA TTCCTTATTG CCATCCCTGC GCGATGCCTT TGCGAAACAT 
GCGCAAGTGA TCCTCGAAGC GCCAACGGGT GCGGGTAAAT CGACCGCATT GCCCTTAGCC
ATGCTGGATT GGCCTGAGAT TTCTGGGCGG ATTTTAATGC TGGAACCTCG ACGTGTTGCT
GCCCGTAGCG TGGCGCAATT TATTGCCAGT TGTCGGCAAC AGGCGGTAGG GCAAGAGGTA
GGTTATCGCG TGCGCGGCGA GTCAAAGGTC AGTGGTGAAA CTCGACTTGA GATTGTCACC
GAAGGGATTT TAACTCGCAT GATCCAGCAA GATCCTGAAT TAACAGGCAT CGAGATGATC
ATTTTCGACG AGATCCACGA GCGGCATTTG ACCACAGATC TCGGTTTAGC CTTGGCGCTC
GAAGTGCAAA GCTCGCTGCG GGATGACTTG AAAATCCTCG CCATGTCGGC AACCTTATCT
GGCCTGACAT TGGCTGAGTT GATGCCCGAT GCCGCTCTGC TACAGAGTGA AGGGCGCAGT
TTCCCGGTCG ACATTCGATA TCGTCCCGTT GCTGGGCAGC AGCATTGGCT CGATCATCTT
AGCCGCGTTG TACTCGATGC CGCGACATCA TTAAGTGATA ACGGCCCGCA GGATATTTTG
GTGTTTTTGC CCGGTAAAGC CGAAATCCTT AGAGTGGCGC AGTATCTAGA AGAGCGCCTC
GATAACAGTC GCGTGACGGT GTGCCCACTC TATGGCGAGC TGTCGGCGCA GGAGCAGGAC
AGGGCGATAA AGTCCGACAG CAGTAGGCGC AAAATTGTGC TCTCCACCAA CGTGGCCGAG
TCGAGCCTGA CCATCGAGGG CATTGGCCTT GTTATCGACA GCGGTTATAA ACGCCAAGCC
AGTTTTAATC CTAAAACTGG GGTGACACGT TTAAGCCTTA AGCGCATCAG CCAAGCCTCG
GCAACCCAGC GTGCTGGCCG TGCGGGGCGT TTGGCGGCGG GCGAGTGCAT CCGTTTATGG
GGCCAAGAGG AGCATCAACG TCTACTCAAG GCCGATGAGC CCGAAATCAG CCAAGCCGAC
TTAGTCGCCA TGGCCCACGA CTGTGCCTAC TGGGGCGCGA AATCCTTCAG CGACTTACTG
TTATTGACTG CGCCGCCCAC GGTGAACGAG GCATTAGCTT GGCAACTGCT TCAGCGTTTA
GGCATGGTCG ATGAACAAAA CAAGCTAACT GCGCATGGCA AAGCTGCCTA TGAGCTGGGG
TGTCATCCGC GCCTCGCCCA TATGTTATTG GTGGCCAAAT CTCGCGATGA ACATCAACTG
GCGGCCTTAG CCTGTTTACT GGCGGGGATT TTAGAGGCGC GAGGATTGCC ACGCAAAGGC
GCCGATATCA TGAATTATCT GCACTTTGCC ACCCAAGGCA GTGCGGGGCA GCAGGCCAAA
CAATGGCTTA AAAAGCTGGC GCTAGATAAG CAATTTACTC AGGCCGATTT AGTGGCCATC
GCCTCCCATG CCCATCATCA GGATGTCGGT TTGCTGTTGG CGCTGGCTTA CCCCGACCGG
ATTGCCAAAT CCCGTGGCGT TGAGGGGTAT CAATTGGCCA ATGGTACGGG TGTGGTGCTC
AACGCCGAAG ATGCCTTAGC GCAAACGCCT TGGTTGGTGG TGGCGGATTT TCAAGAAACC
GAAGGCAAGA ATGCCGGGCG GATTTATCTC GCCAGTCCAT TATCGCCAAG TCTGTTCGAT
GAGGAATTGG CCGAGCTGGT GGAGCGCCAT GACCAATGCG GCTGGGATGA AGCCAAAGGC
CGCGCGGTGG CCGAGCGCCA AACCAAAGTC GGGCAGATTT TACTGAAATC AGAGGCTATT
GCTAATCCGA ATCGCGGCCA AATTGTGGCG GCATTGCTGA GTTACATTCG TCAGCAGGGG
TTACAAATCC TTAATTGGCA CGATAACTTA GCGCAGTTTC AGGCTCGATT ACAGTTAGCG
CGCGATTTAG ATCCGAATGC CGATTGGCCG GATATGAGCG ATACCGCGCT GCTGGCAAAC
CTTGAAACAT GGCTGGCGCC CTACCTTGAA AATGTGAATA ATCTGCCGCA ATTACAAAAA
CTCGATTGCT TTAGTTTGCT GGTAAACCAA TTAACTTGGT CACAGCAGCA GGCGCTCGAT
GCGCTGTTGC CCACCTCATG GCCGTTAGCC ACGGGCACCT TCGCGCCGAT ATTGTACGAT
GCCTCGGGGC GAGCCTTGCT GCGGGTACGT TTGCAGGAAA CCTTTGGCAT GGCTGACAGT
CCGCTACTGG CCCAAGGTAA GCTTAAGGTG ACGATGGAAT TGCTGTCACC GGCGCAGCGC
CCCTTGGCTC TAACAGCGGA TCTCGCCAGT TTTTGGCAAG GGCCCTATGT GGAAGTGAAA
AAAGAAATGC GTGGGCGTTA TCCTAAACAC CTGTGGCCGG ACGACCCTGC CAATACGCAG
CCCACAAAAT TTACCAAGAA GAAAACCTTA GGTTTATCTC AGTCATAG
 
Protein sequence
MNNLPIHSLL PSLRDAFAKH AQVILEAPTG AGKSTALPLA MLDWPEISGR ILMLEPRRVA 
ARSVAQFIAS CRQQAVGQEV GYRVRGESKV SGETRLEIVT EGILTRMIQQ DPELTGIEMI
IFDEIHERHL TTDLGLALAL EVQSSLRDDL KILAMSATLS GLTLAELMPD AALLQSEGRS
FPVDIRYRPV AGQQHWLDHL SRVVLDAATS LSDNGPQDIL VFLPGKAEIL RVAQYLEERL
DNSRVTVCPL YGELSAQEQD RAIKSDSSRR KIVLSTNVAE SSLTIEGIGL VIDSGYKRQA
SFNPKTGVTR LSLKRISQAS ATQRAGRAGR LAAGECIRLW GQEEHQRLLK ADEPEISQAD
LVAMAHDCAY WGAKSFSDLL LLTAPPTVNE ALAWQLLQRL GMVDEQNKLT AHGKAAYELG
CHPRLAHMLL VAKSRDEHQL AALACLLAGI LEARGLPRKG ADIMNYLHFA TQGSAGQQAK
QWLKKLALDK QFTQADLVAI ASHAHHQDVG LLLALAYPDR IAKSRGVEGY QLANGTGVVL
NAEDALAQTP WLVVADFQET EGKNAGRIYL ASPLSPSLFD EELAELVERH DQCGWDEAKG
RAVAERQTKV GQILLKSEAI ANPNRGQIVA ALLSYIRQQG LQILNWHDNL AQFQARLQLA
RDLDPNADWP DMSDTALLAN LETWLAPYLE NVNNLPQLQK LDCFSLLVNQ LTWSQQQALD
ALLPTSWPLA TGTFAPILYD ASGRALLRVR LQETFGMADS PLLAQGKLKV TMELLSPAQR
PLALTADLAS FWQGPYVEVK KEMRGRYPKH LWPDDPANTQ PTKFTKKKTL GLSQS