| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3406 |
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| Symbol | |
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| ID | 4254672 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 4034611 |
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| End bp | 4036905 |
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| Gene Length | 2295 bp |
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| Protein Length | 764 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638124087 |
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| Product | penicillin-binding protein 1B |
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| Protein accession | YP_739444 |
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| Protein GI | 114048894 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACTA AGACGACAAA AAAAGCGAAA GCGAAGCGCA GCCGTGGCCT GTTAGGGCAA
ATTTGGTCGC TCACTTGGAA ACTAGCCTTA ATCGGCCTAG CCGTTGTGAC CTTCTACAGT
ATTTACCTCG ATCAAATTAT TGCCCGCAAG TTTGAGGGGC AAAAATGGCA CTTACCCGCG
CAGGTATTTA GCCGCTCGAT GGCCTTATAT CCCGGCGCAG CCGTGAGTCA TCCACAGTTA
ATGGCCGAAC TCAAACTCTT AGGTTATCGC AAAGTCGCCA ATCCCCGTGA GGTCGGTGAG
TTCTCTGCAT CCAGCACCAA AATCGAATTA TGGCGTCGTC CCTTCTTACA TCCTGAGGGC
GATCAGGCCG AGCAGCGGGT GATGATTAGC TTCGACAGCG ATGGGATCAG CTCGATTGCG
CGTATGTCAG ATAAGCGCCA GTTGGCGGTA TTTCATTTAG AACCTGTCTT GCTCGACCGC
ATTATTGCGG GTGACGGCGA AGACAGATTG TTTGTTCCCA CAGAAGAAAT GCCCAAGGCG
ATTGTAAAAG CCTTGCTGCT GGTGGAAGAC CGCAGTTTTT ACGAACATCA CGGGGTAAAC
CCCTTCGCGA TTCTGCGCGC CGCTTTTGTG AATATCAGTG CGGGGCGAAC TGTGCAGGGC
GGCTCGACAC TGACCCAGCA GTTGGCGAAA AACTTCTTCC TCTCGAGCGA GCGCTCTTTG
CTGCGTAAAA TTCGCGAAGC CCTAATGGCG GTGATTATCG ATTTTCGTTA CAGCAAGGAA
GAAATCCTCG AGGCCTACCT CAACGAAGTG TATATGGGGC AAGATAAATC CCGCGCCGTG
CATGGGATGG GGCTGGCTTC ACAGTTCTAT TTTGGTCGAC CCATCGGCGA GCTAACCACG
GCGCAGCAAG CGTTTTTAGT GGCGGCGATT AAGGGGCCTT CCTATTACAA CCCATGGCGT
TATCCTGAGC GCAGCCAAGA GCGTCGCGAT TTAGTACTGC GTCTCTTGAT GGAGTCGGGT
GAACTGAGCA CCGCGCAATA CAAGGTAGCG GTAGAGTCGC CCTTAGGCTT ACGTAACGCC
AATAAACCAG TGCATCAAAA ATTACCTGCA TTCTATGCCT TGGTTAAACA AGAGCTTAAC
GAGCGCTATG GCGATGCGTT ATTAAAACAA TCTGGAGTGA AGATTTACAC CACACTCGAT
CCAATGGCGC AGGAAGCCGC CGAAATCGCC GTGACTCAAA CCTTTAAGAG CTTAGATAAA
GGCAATAAGT CATTGCAGAT TGGTATGGTC GTGACGGACA AATACACTGG CGGTATCGCG
GCTATGGTGG GTGATAAGAC GCCAGGCTTT GACGGCTATA ACCGCGCGGT TGAGATCCGC
AGACCCATTG GCTCGCTCAT CAAGCCATTT GTGTATGCGA CCGCATTGGC GCCGAATAGC
CAGTTTACCT TGGCTTCGCC ACTTAAAGAT CAGCCGATTA CCCTAAAGAA TGAGCAGGGT
AAAACCTGGT CACCGCAGAA CTTTGATAAG AAGTTTAGTG GACAAGTCTC CTTGTTAACG
GCGCTGAAAA AGTCGATGAA CGTACCTACG GTGAACCTCG GGATTGCCGT GGGTGTGGAT
GCGGTGGCAA CCACGCTGGC GAAATCTGGC TGGCAAGAGC CGCTTAACGA ATACCCGTCT
ATGCTACTGG GCGCCGTGAA TGGCTCGCCC TTAATGGTGG CGCAGGTTTA TCAGACGCTG
GCCGATTATG GTGCCTATCG CAAACTCACC ACAGTGACGG CGGTGCTCGA CAGTCACAAT
CAGCCGTTAC CTGTGACCCG CTCACCGAAG GAGCAAGCTA TTACGCCGGA TACTGACTTC
CTAGTGCAAT ATGCCATGCA GCAAGTGGTG CGCTCGGGTA CGGCAACGCG CTTAGGCAAT
GCCTTCCCCG GTGTGGCGCT GGCGGGTAAA ACCGGTACCA GTAACGATAG CCGCGACTCT
TGGTTCGCCG GTTTTGACGA GCGTAACGTC GCGGCGATTT GGGTCGGACG CGACGATAAC
GGCAAGACCA GCCTCTACGG TAGCAGTGGC GCCATGGCGG TGTATCAAGC CTTCTTGAAG
GAGCGTCCAC CGATTGGGCT GCGCTCGATT CCGCCAACGG GCGTGATCCA AGGTTACTTT
GACCGTGATA CTGGTGAAGC TAAGGAGGCG GGATGCCGCA ATACCGAGGC ATTGCCAGCC
CTTAGAGGTA CCTATAATCC TGCGAAAAAC TGCGGCGAGC CGTTGCAGTG GTGGCAGAAG
ATTTTAGGTC AGTAA
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| Protein sequence | MTTKTTKKAK AKRSRGLLGQ IWSLTWKLAL IGLAVVTFYS IYLDQIIARK FEGQKWHLPA
QVFSRSMALY PGAAVSHPQL MAELKLLGYR KVANPREVGE FSASSTKIEL WRRPFLHPEG
DQAEQRVMIS FDSDGISSIA RMSDKRQLAV FHLEPVLLDR IIAGDGEDRL FVPTEEMPKA
IVKALLLVED RSFYEHHGVN PFAILRAAFV NISAGRTVQG GSTLTQQLAK NFFLSSERSL
LRKIREALMA VIIDFRYSKE EILEAYLNEV YMGQDKSRAV HGMGLASQFY FGRPIGELTT
AQQAFLVAAI KGPSYYNPWR YPERSQERRD LVLRLLMESG ELSTAQYKVA VESPLGLRNA
NKPVHQKLPA FYALVKQELN ERYGDALLKQ SGVKIYTTLD PMAQEAAEIA VTQTFKSLDK
GNKSLQIGMV VTDKYTGGIA AMVGDKTPGF DGYNRAVEIR RPIGSLIKPF VYATALAPNS
QFTLASPLKD QPITLKNEQG KTWSPQNFDK KFSGQVSLLT ALKKSMNVPT VNLGIAVGVD
AVATTLAKSG WQEPLNEYPS MLLGAVNGSP LMVAQVYQTL ADYGAYRKLT TVTAVLDSHN
QPLPVTRSPK EQAITPDTDF LVQYAMQQVV RSGTATRLGN AFPGVALAGK TGTSNDSRDS
WFAGFDERNV AAIWVGRDDN GKTSLYGSSG AMAVYQAFLK ERPPIGLRSI PPTGVIQGYF
DRDTGEAKEA GCRNTEALPA LRGTYNPAKN CGEPLQWWQK ILGQ
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