| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3384 |
|---|
| Symbol | |
|---|
| ID | 4254998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 4005859 |
|---|
| End bp | 4008216 |
|---|
| Gene Length | 2358 bp |
|---|
| Protein Length | 785 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 638124066 |
|---|
| Product | putative alpha-1,2-mannosidase |
|---|
| Protein accession | YP_739423 |
|---|
| Protein GI | 114048873 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3537] Putative alpha-1,2-mannosidase |
|---|
| TIGRFAM ID | [TIGR01180] alpha-1,2-mannosidase, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.570522 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0294946 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGATTGT TAACGAAATG GTCGCTGCTA GGCACAGTAT TGCTCGGCAG CGTTCAGGTA
CAAGCCGAAG ACCTGACCCA TTGGGTCGAT CCTTTTATTG GTACAGGTGG CGATGGCCAT
ACCTTTCCCG GGGCCGTTGT GCCCTTTGGT ATGGTACAGC TAAGCCCGGA TACCGATAAC
CCCACGCGCG GCGTCTCACC CCAGAGTGAA ATTTACAAGC GCTGCGCCGG TTACCATTAT
GACGACAGTA CCATAGTCGG CTTCTCTCAT ACCCATTTCA GCGGCACTGG CCATTCGGAT
CTGGGCGATC TGCTTATCAT GCCAATGACA GGCACCCCCA AGACCGAGCC CGGCACCGCC
GCCGATCCGG ACAGCGGCTA CCGCTCGCGC TTCAGCCATG AAGATGAAGA AGCATCCCCG
GGCTACTATC GGGTCAAACT CACCGATTAT CAGATTGATG CCGAACTCAC CACCACAGCC
CGAACCGGCA TGCACAGATA CAGTTTCCCC GAAGCCGACA AGGGCCATGT GCTGATTGAT
TTGACCCACG GTATCTACAA CTTCGCCAAT AAGGTGATTT GGAGTGATGT GCGGGTAATT
GACGACAGCA CCCTTATCGC TTCACGCCGC TCCAACGGTT GGGCCAGTGA TCGCCCCATG
TACTTCGCCA TCCGCTTCTC ACGCCCCTTT GACGATATCG AGCTGATTAA CGAAGACAAC
GCTCGCTACC GCTGCATGGG CTGTCTGGAC AACAAAAACG GCAAACATTC CACCATAGTC
AACAGCCGCA TCCCCTTTAC CGCAGGCAAG GCAATTAAAG TACTGGCCCG CTTCGATAAT
CCCCATCAGG CACCGCTATT GGTAAAAGTG GGCGTATCGG CGGTAGATAA GAGTAATGCG
CTGGATAACT TAAACAGCGA ACTGCCACAC TGGGACTTTG ACAAGGTGCG CAGCAACGCC
AGGGCCGCCT GGCAGACCGA ACTTGAGCGT ATGGAAGCCA AGGGCGATAA GTCGCAAAAA
CGCCAGTTCT ACACCGCGCT TTACCACGCA CTGCAAGCGC CGAGTCTTTA CCAGGATGTC
AATGGCGAAT ACCTCGGCGT TGATGGGGAA ATCCACAAGG CAGACTTTAC CCACTACACC
CTGTTTTCAC TGTGGGACAC TTACCGCGCC CTGCATCCAC TGCTGACCCT GGTGTCGCCC
GAGCGGGTGC CGGATATGAT TAACTCCATG CTGGCCCATT ATGACCAGAG TTATGACCGT
ATCCTGCCGA TATGGTCGTT TCAAGGCCAC GAAACCTGGA CCATGATTGG CTACCATGCT
GTGTCTGTTA TCAGCGACGC CTGGCAAAAA GGTATTCGCG GCTTCGATGG TGAGCGGGCG
CTGGATGCCA TGACCGCCAC CGCCAACCAC CCCAATTACG ATGCCATCCC CGAATACCTG
AAATACGGCT ATGTGCCCAT GGATGTGCTA CCCGAGTCAG TGTCCATCAC CCTGGAATAC
GCCTACGATG ACTTCGCCAT CGCCCGCATG GCCGAGAGCA TGGGGGAGAC CGACATTGCC
AAAGCCTTCG ACAAGCGTGC AGAGAGCTGG CGTAATGTGT TTGATCCAGA AACCAAATTT
GCCCGTGGCC GCGACAGCAA AGGCAACTGG GATAAAGAGT TTGACGTGGA AGAAGCCAAG
TACATGGGCC CCTTCACCGA AGGCAACAGC TTCCAGTACA GTTTCTACGT GCCCCACGAT
GTGGCGGGTC TTATTGATAC CAAGGGAGGC GACGACGCCT TTATCGAGCG CTTGGATGAG
CTGTTCACCC GTCCACTCCA TGCCGACAAA ATCAAAGAGC ACGAAGACAT CGCCGGTTTG
ATTGGCCAGT ACGCCCACGG TAACGAGCCG AGCCACCATA TTGCGTATCT ATACAACCAT
GCAGGCGCCC CCTGGATGAC CCAAAGCCGC ATCCGCCAGA TCATGGATAC CCTGTCAAAT
GATACCCCAT CGGGCCTCGC CGGTAACGAC GATGTGGGCC AGATGTCGGC CTGGTATCTG
TTCTCCGCCA TGGGCTTTTA TCCAGTCACC CCCGGCGACA TGACCTATGT GATAGGTGCG
CCACAACTGC CTCAAGTGAA CCTCAAACTC AGTAATGGCA AGCAATTCAA GGTCATTGCC
AAGGGACTCA GTAAAGACAA CCTCTACGTT GCCAAGGTAA GCCTTAACGG CAAACCGCTG
AGTCAGAGTT TTCTGCACCA TAACGACATC ATGGCCGGTG GCGAGCTGGT ATTTGAGATG
GCAGCAACGC CCAACAAAAC CTGGGGCAAG GCCATTGATG CCCGCCCCAA GGCCATGAGC
CCCTACAAAA CTAAATAA
|
|---|
| Protein sequence | MGLLTKWSLL GTVLLGSVQV QAEDLTHWVD PFIGTGGDGH TFPGAVVPFG MVQLSPDTDN
PTRGVSPQSE IYKRCAGYHY DDSTIVGFSH THFSGTGHSD LGDLLIMPMT GTPKTEPGTA
ADPDSGYRSR FSHEDEEASP GYYRVKLTDY QIDAELTTTA RTGMHRYSFP EADKGHVLID
LTHGIYNFAN KVIWSDVRVI DDSTLIASRR SNGWASDRPM YFAIRFSRPF DDIELINEDN
ARYRCMGCLD NKNGKHSTIV NSRIPFTAGK AIKVLARFDN PHQAPLLVKV GVSAVDKSNA
LDNLNSELPH WDFDKVRSNA RAAWQTELER MEAKGDKSQK RQFYTALYHA LQAPSLYQDV
NGEYLGVDGE IHKADFTHYT LFSLWDTYRA LHPLLTLVSP ERVPDMINSM LAHYDQSYDR
ILPIWSFQGH ETWTMIGYHA VSVISDAWQK GIRGFDGERA LDAMTATANH PNYDAIPEYL
KYGYVPMDVL PESVSITLEY AYDDFAIARM AESMGETDIA KAFDKRAESW RNVFDPETKF
ARGRDSKGNW DKEFDVEEAK YMGPFTEGNS FQYSFYVPHD VAGLIDTKGG DDAFIERLDE
LFTRPLHADK IKEHEDIAGL IGQYAHGNEP SHHIAYLYNH AGAPWMTQSR IRQIMDTLSN
DTPSGLAGND DVGQMSAWYL FSAMGFYPVT PGDMTYVIGA PQLPQVNLKL SNGKQFKVIA
KGLSKDNLYV AKVSLNGKPL SQSFLHHNDI MAGGELVFEM AATPNKTWGK AIDARPKAMS
PYKTK
|
|---|
| |