| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3371 |
|---|
| Symbol | |
|---|
| ID | 4257462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 3986657 |
|---|
| End bp | 3987373 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638124053 |
|---|
| Product | two-component response regulator |
|---|
| Protein accession | YP_739410 |
|---|
| Protein GI | 114048860 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000464227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00803379 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAATC CGCACATTCT GATCGTTGAA GATGAAGCCG TTACCCGTAA CACGCTGAGA
AGTATTTTCG AGGCAGAAGG GTATGTGGTA ACTGAGGCCA ATGATGGCGC AGAAATGCAT
AAGGCTATGC AGGAAAACAA AATTAACCTA GTGGTTATGG ACATTAACCT ACCAGGTAAA
AACGGTCTGT TGTTGGCACG TGAATTACGT GAAATCAACA ACATCGGTCT GATCTTCCTG
ACAGGCCGTG ACAACGAAGT CGACAAAATC CTTGGACTTG AAATTGGCGC GGACGATTAT
ATTACCAAGC CGTTCAACCC ACGTGAATTG ACGATTCGTG CTCGCAACCT TCTGACTCGT
GTGAATAGCG CTGGTAACGA AGTCGAAGAA AAGAGCTCTG TCGAATACTA CCGTTTCAAC
GATTGGAGCC TAGAGATCAA TAGCCGTTCT CTGGTGAGCC CACAGGGTGA ATCTTACAAA
CTGCCACGTA GCGAATTCCG CGCTATGCTG CACTTTGTTG AAAACCCAGG CAAAATCTTA
ACTCGTGCCG ATCTGCTGAT GAAGATGACT GGCCGTGAGT TAAAGCCACA CGACCGTACT
GTTGACGTGA CTATCCGTCG TATCCGTAAG CACTTCGAGA GCTTGCCAGA TACGCCAGAA
ATCATCGCGA CTATCCACGG TGAAGGCTAC CGTTTCTGCG GTAACTTAGA AGACTAA
|
|---|
| Protein sequence | MQNPHILIVE DEAVTRNTLR SIFEAEGYVV TEANDGAEMH KAMQENKINL VVMDINLPGK
NGLLLARELR EINNIGLIFL TGRDNEVDKI LGLEIGADDY ITKPFNPREL TIRARNLLTR
VNSAGNEVEE KSSVEYYRFN DWSLEINSRS LVSPQGESYK LPRSEFRAML HFVENPGKIL
TRADLLMKMT GRELKPHDRT VDVTIRRIRK HFESLPDTPE IIATIHGEGY RFCGNLED
|
|---|
| |