| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3364 |
|---|
| Symbol | |
|---|
| ID | 4255319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 3978521 |
|---|
| End bp | 3980317 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638124046 |
|---|
| Product | nitrate/nitrite sensor protein NarQ |
|---|
| Protein accession | YP_739403 |
|---|
| Protein GI | 114048853 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3850] Signal transduction histidine kinase, nitrate/nitrite-specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000476716 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0297059 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAG GCAGCCTTAC CTCCAAAATA CTGGGTTTAA TGTTAGTACT GATTTTACTT
TCTAGCAGCC TAGCCATCTT CGCAATCATC AATTTGTCTT ACAGCTTAGG CGATGCAAAA
GCCATCAATG CCTCGGGTTC ACTGCGGATG CAAAGCTATC GCCTGATGTT TTATGCCAAT
TCAGGCAGTG AAGCCGCCCA AGAGAAAATT GCCGAGTTTG AAAACACTCT GCATTCCGAG
GCGCTGCAAC CATCAAACAG CTGGTTCAGC CCGAAAAAAA TCGCCGAACA GTATCAGCTC
GTTATCGATA AATGGCTGGT CATGAAGTAC TACATTGAGC AGGAAAACTC CCGCGACTAC
GCCGCCTCGC TCAAGGACTT TGTCGATACT ATCGATTTAT TAGTGCTCGA AATGGAGCAC
CATGCCGCCT TCAAGTTGCG CCTCCTTGCC GCGAGCCAGA TTTTTGGGCT TGGGCTGATG
CTCGTTATCG CTTTTCTCGC GGTACGCTTT ACCAAGCGCA AAGTCGTAGT GCCGTTGCAG
CAGTTAATGG AATCGGCCAA TACCATTTCC AAGGGCAACT TCGAGATAGA AATGCCCGAG
ACTGAATATA TCGAGCTCAC CGCCCTAACC CATGCGCTGC AAAAAACCGC CCGCGAGCTG
GCAACCCTGT ATAGCAACTT AGAATCCCAA GTCGCCGAAA AGACCCTAGC ACTCACTAGG
GCAAACAATG AGCTAGCATT TTTATACGAT AACCTATTGA CACTTAATGC CAAAAAGCTG
GACTACAAGG CGCTCAAGGC GGCGTTGAAT CAATTGAAGG ACTATGAGTC TATCGACCAT
TTAAGACTGA TCATTCAGTA CCCAGAGCAA GAGCTAGAAG TGGTTGAAGC CGATGGTGGC
TGGCCGGAAA CGACTCCCCT TTGCACCCGC TTTCCACTGC AATTTGAGCA GGCTGACTTA
GGTTACTTAG AACTGATTTC GGCGCAGGAT ACCAATACGC CGCTGTTTAA AAACTTTGCC
ATCATGCTCA CCCGCTCCAT CGTTATCCAT AACGCCACCG AGCAGCGTCA ACAACTGGCC
TTGATGGAAG AACGTGGGGT TATCGCCAGA GAGTTACACG ACTCCCTCGG CCAAGTTCTG
TCTTTCCTCA AAATTCAAAT TAGTTTGCTA CGCAAAAACT TGGATCATAG CTGTCGCAGC
CCCGCAGTGG AGAATCAACT GACAGAGATA AACGAAGGGG TGAGTACAGC CTATGTACAG
CTCAGGGAGT TATTATCCAC CTTCAGATTA ACCATTAAGG AACCGAATCT GAAGAACGCG
ATGGAAGCCA TGCTAGAGCA GCTCAGGGCC AATACCGATA TCAAGATCCA CCTCGATTAC
AAACTTTCAC CCCAATGGCT CGAGGCCAAG CAGCATATCC ACATCCTGCA GATCACCCGT
GAGGCCACAC TCAATGCCAT CAAGCATGCT AATGCCAGTC GGGTCATCAT TCGCTGTTAT
AAAGATGATA ATGGCATGGT CAATATCAGC GTCAGTGATA ACGGCATAGG GATTGGTTAT
CTTAAAGAAC GAGATCAACA CTTTGGCATA GGGATAATGC ACGAACGCGC AAGTAAATTA
GGCGGAACTG TTGTATTTAG TAGCAATGAT ACGCACACTA ATAGCAAGGG AATTGCCGAA
CAACTAGACC AAGAAAACTC GGAGATGTCC TTAACACCTA ATAACAAATC CAATTTGTCT
CAGGGAACCA AAGTTACATT AGTTTTCCCT TCTCAACAGG AGCCTACACA TGGGTAA
|
|---|
| Protein sequence | MKRGSLTSKI LGLMLVLILL SSSLAIFAII NLSYSLGDAK AINASGSLRM QSYRLMFYAN
SGSEAAQEKI AEFENTLHSE ALQPSNSWFS PKKIAEQYQL VIDKWLVMKY YIEQENSRDY
AASLKDFVDT IDLLVLEMEH HAAFKLRLLA ASQIFGLGLM LVIAFLAVRF TKRKVVVPLQ
QLMESANTIS KGNFEIEMPE TEYIELTALT HALQKTAREL ATLYSNLESQ VAEKTLALTR
ANNELAFLYD NLLTLNAKKL DYKALKAALN QLKDYESIDH LRLIIQYPEQ ELEVVEADGG
WPETTPLCTR FPLQFEQADL GYLELISAQD TNTPLFKNFA IMLTRSIVIH NATEQRQQLA
LMEERGVIAR ELHDSLGQVL SFLKIQISLL RKNLDHSCRS PAVENQLTEI NEGVSTAYVQ
LRELLSTFRL TIKEPNLKNA MEAMLEQLRA NTDIKIHLDY KLSPQWLEAK QHIHILQITR
EATLNAIKHA NASRVIIRCY KDDNGMVNIS VSDNGIGIGY LKERDQHFGI GIMHERASKL
GGTVVFSSND THTNSKGIAE QLDQENSEMS LTPNNKSNLS QGTKVTLVFP SQQEPTHG
|
|---|
| |