| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3362 |
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| Symbol | |
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| ID | 4255317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 3974789 |
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| End bp | 3976723 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638124044 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_739401 |
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| Protein GI | 114048851 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0290676 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTACA AGTTTGCCCT TCAACAATCT CAAAGAGAGC GCTTATTCGC AGATATGGCG
ATTGATACAG ATAAGATTAC TGTACCGCCT GAAATGCTAG AAAATTGGCA ACAAACCTTA
GATCTACTCT CCGAGATTGT GGATACGCCC GCCGCGCTTA TTATGCGTGT CCACCCTACA
GAGATTGAAG TATTCGTCTC GAGCCATAGC TTGGGAAATC CCTACAAACC CCACGATAAA
GACCATTTAG GCCATGGTCT TTATTGCGAA ACCGTGATGA AAGAATGTCG AGAGCTCCAT
ATTCCCAATG CCTTGAAAGA CGCCAATTGG GATAAAAACC CCGACATCAA GCTAGGGATG
ATTGCCTATT GCGGCCTCCC CTTACACTGG CCCGATAGCA GCACCTTCGG CACTATTTGT
ATGCTCGACA GCAAGGAGCA TAACTACAGT CAGCAGTTCC GCAGTTTGCT AGCACGGTTT
CAAAATGCCA TCGAAGCCAA TTTGATCACC CTGTACCAAC AAGCTAAATT GCAGCTCCAT
AACCAGCAAC TCGAGCAAAA AGTACAGCAG CGAACCCACG AGCTCGCTGA ACTCAGTGCC
AAGCTAATCC GCGAAATCGA AACACGTACC ACGACCGAAA GCTCACTTGA GTACCATAAG
AGCTACGATC CGCTGACTGG CCTCCCCAAC AGGCTCAATC TACTCAACAC TTTGGCTAGA
ATGCTGGAAG AGATTAACCG TAAAGAAAAA ATCTCAGTGT TTTACCTAGG TCTACGTAAC
TTCAAATCCA TCAATGACAG CTATGGTTAC CTTATCGGCG ATAAGATATT GACCATCTTG
AGCCAGCGAT TACAGCATTG CACAGACGGC CATACCTTTA TTGCCCGCAT CGCAGGGGCG
GAGTTTGTTC TCGTACAAGC CCACAAGCCC TCTCAGCGCG AAACCAATAA ACTACTTAAT
CAGATAATCA ACTGCTGCAA TGCCCCCTTT GGCATTGCAG ACTTTGTGAT CACTACGCCT
TCTTCGATTG GCATAGCACA GGCCCCAAGC GATGGTATCG ATGCCGCGGT TTTGCTACAA
AAAGCGGGCG CCGCCATGAC CATCAGCAAG GCCGAAGGCA TACCCTATAG CTTTTTCAAT
CAAGATACTC AAACCGCACT TCGTCAGCGT TATCAACTCG AGTCTCGCTT AGTCGACGCA
CTGCAAAAAA ACGAACTCAG CCTGCAATAT CAACCCTTTA TTGAACTAAA AACCCACAAG
GTCATTGGCG CAGAAGCGCT ACTACGTTGG CATAATCCGG TGTTGGGTCA AGTCTCTCCA
GACCGATTTA TCGCCTTAGC CGAGCGTAAT GGGCAAATCA TGGAGATAGG CAACTTCGTC
CTGCACAGCG CCATTAAGCA AGCCGCTGAC TGGTGCCAAA TGTTGCAGCG GGACTTTAAA
ATCGCCATCA ATATCTCCCC GGTGCAAATG CGTAATCCTC GCTTTGTTGA ACATATTGCC
GAGCTATTAA CCTTATACCA ATTACCCGCC ACCGCGCTGG AGCTGGAGAT CACCGAGGGC
ATGTTGTTAC AGGACGAACA CTTAGCCCAT AAGGCCATTA TCCAGTTGCA GGAACTGGGG
ATCCGCATCT CACTCGATGA CTTTGGCACC GGCTACTCTT CATTAAGCTA TCTGCAGAAG
TACTCCTTCA ATACCTTAAA AATCGACCGC TGCTTTATCA GCAAACTCGA AAACAGCGAA
CAAGACAGAG AGTTAACTAA GGCCATCATA GCGATTGGCA AAAAACTCAA ACTACAGGTG
ATTGCCGAAG GCGTCGAAAA CCCAAATCAG GACAGTTTTA TCCGCAGTGA AGACTGCGAT
TTAGGGCAAG GCTATCTATA TGGCAAACCC GTTACACCTG AACAATTTGA GCGTGATTTC
ATCGGTAAGC CTTAA
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| Protein sequence | MPYKFALQQS QRERLFADMA IDTDKITVPP EMLENWQQTL DLLSEIVDTP AALIMRVHPT
EIEVFVSSHS LGNPYKPHDK DHLGHGLYCE TVMKECRELH IPNALKDANW DKNPDIKLGM
IAYCGLPLHW PDSSTFGTIC MLDSKEHNYS QQFRSLLARF QNAIEANLIT LYQQAKLQLH
NQQLEQKVQQ RTHELAELSA KLIREIETRT TTESSLEYHK SYDPLTGLPN RLNLLNTLAR
MLEEINRKEK ISVFYLGLRN FKSINDSYGY LIGDKILTIL SQRLQHCTDG HTFIARIAGA
EFVLVQAHKP SQRETNKLLN QIINCCNAPF GIADFVITTP SSIGIAQAPS DGIDAAVLLQ
KAGAAMTISK AEGIPYSFFN QDTQTALRQR YQLESRLVDA LQKNELSLQY QPFIELKTHK
VIGAEALLRW HNPVLGQVSP DRFIALAERN GQIMEIGNFV LHSAIKQAAD WCQMLQRDFK
IAINISPVQM RNPRFVEHIA ELLTLYQLPA TALELEITEG MLLQDEHLAH KAIIQLQELG
IRISLDDFGT GYSSLSYLQK YSFNTLKIDR CFISKLENSE QDRELTKAII AIGKKLKLQV
IAEGVENPNQ DSFIRSEDCD LGQGYLYGKP VTPEQFERDF IGKP
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