Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3350 |
Symbol | |
ID | 4255305 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 3964633 |
End bp | 3964920 |
Gene Length | 288 bp |
Protein Length | 95 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638124032 |
Product | SSU ribosomal protein S30P / sigma 54 modulation protein |
Protein accession | YP_739389 |
Protein GI | 114048839 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1544] Ribosome-associated protein Y (PSrp-1) |
TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00143077 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.128723 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAAATAA ACCTGAGTGG ACACCATATC GAGATTACCG AATCGTTACG GGCATATGTT GAGGAAAAGT TTTCAAAACT TGAACGTCAT TTCGAACAGA TCAATAATGT GCACGTTGTG CTCAATGTTG AGAAAATGCA ACAAATTGCC GAAGCGAGAA TCAACCTCAC CGGTGGTGAA GTCTTCGCGA CTTCAGAGCA TGCAGATATG TATGCTGCCA TAGACGTCCT GATTGACAAG CTTGATCGTC AGGTTATTAA ACACAAAGAG AAGTTAACAA AACACTAG
|
Protein sequence | MQINLSGHHI EITESLRAYV EEKFSKLERH FEQINNVHVV LNVEKMQQIA EARINLTGGE VFATSEHADM YAAIDVLIDK LDRQVIKHKE KLTKH
|
| |