Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3349 |
Symbol | |
ID | 4255304 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 3963129 |
End bp | 3964604 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638124031 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_739388 |
Protein GI | 114048838 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0341737 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.167062 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCGT CACTCCAGCT CAAACTGGGT CAACAGTTAA CCATGACGCC ACAACTTCAA CAGGCCATTC GTCTGTTGCA ATTGTCGTCA TTGGAACTGC AGCAAGAGAT CCAGCAAGCC TTAGACTCTA ATCCTCTTCT CGAGCTGGAA GAGGAGCAAT TTGACGCGCC TACCGAACGT AAGCAAGATA TCGCCGATAC CGACTTTAGC GAAACGACGG CTCAGCCACA GGAACAAGAT AATTCCACCG TGGACATTGC CGAGTCGTTG ACCAAAGAAT CCCTGCCCGA AGAACTGCCC ATGGACACCA CTTGGGATGA AGTCTTTACC GCATCGCCAA ACTCAGGTTC TGGTGCCAGC CGTGAAGATG ATATGCCCTT TCAAGGGGAA ACCAGTGAAG GCCTGTACGA ACATTTAGAA TGGCAGAAAA ACCTCACGCC CTTCTCTGAA ACCGATTTAG CCATCGCCAC CGCGATTATT GATGCCATCG ACGATCAGGG ATATCTCACT CAAAGTACTG AAGATATCCT CGAGGCCATG GGCAATCCTG AGATAGAACT GGATGAAGTC GAAGCCGTGC TAAAGCGTAT TCAACACTTC GATCCAGTAG GTGTCGCCGC GAGGGATCTA AGCGAATGTC TGCTTATCCA ACTCTCCCAT TTTTCGCCGG ACACCCCACA CCTCGAAAAC GCCCGCATGT TGATCAAAGA TCATTTAGAT CTGATCGCTG CCCGCGACTT TAGATTATTA ATGCGTAAGA CCAAACTCAA AGAGGACGAC TTAAGGGACA GCATAGCGCT GATCCAAACC TTGAATCCTC GCCCAGGTTT ACTCATCACC CCTGTTGATG AAGAATATGT CATCCCCGAT GTATCGGTAT CGAAGAAAAA CGGCCGCTGG GTGGTCGAAT TAAACCCTGA CTGCATGCCA AAAATCAATG TTAATCAGCA ATATGCAGCC ATGGCGCGCA GCACCAAAAG CCAAGCCGAT AGCCAATTTA TCCGCGGGCA TCTGCAAGAA GCCAAGTGGT TTATCAAAAG CCTTGAAAGC CGTAACGAAA CACTGCTCAA GGTGGCAAAC TGCATAGTGC AATATCAACA GGGCTTCTTC GAATACGGTG AAGAAGCCAT GAAACCTATG GTTCTGAACG ATATCGCCGA GGCGGTCGAG ATGCATGAAT CCACCATTTC ACGGGTGACG ACGCAAAAGT ACATGCATAC CCCAAAGGGA CTTTTTGAAC TAAAATACTT CTTCTCAAGC CACGTCGGGA CTGATGATGG CGGTGAGTGC TCATCCACGG CAATCAGAGC CTTCATAAAG AAACTGGTTG CAGCGGAAAA CCAGAAAAAA CCATTAAGCG ACAGCAAGAT GGCGCAACTT CTGGCAGAAC AGGGAATTAA CGTTGCGCGC AGAACCATTG CGAAGTACCG AGAAGCGATG CTTATTCCCC CTTCCAATCA GCGTAAAAGT TTATAG
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Protein sequence | MKASLQLKLG QQLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLELE EEQFDAPTER KQDIADTDFS ETTAQPQEQD NSTVDIAESL TKESLPEELP MDTTWDEVFT ASPNSGSGAS REDDMPFQGE TSEGLYEHLE WQKNLTPFSE TDLAIATAII DAIDDQGYLT QSTEDILEAM GNPEIELDEV EAVLKRIQHF DPVGVAARDL SECLLIQLSH FSPDTPHLEN ARMLIKDHLD LIAARDFRLL MRKTKLKEDD LRDSIALIQT LNPRPGLLIT PVDEEYVIPD VSVSKKNGRW VVELNPDCMP KINVNQQYAA MARSTKSQAD SQFIRGHLQE AKWFIKSLES RNETLLKVAN CIVQYQQGFF EYGEEAMKPM VLNDIAEAVE MHESTISRVT TQKYMHTPKG LFELKYFFSS HVGTDDGGEC SSTAIRAFIK KLVAAENQKK PLSDSKMAQL LAEQGINVAR RTIAKYREAM LIPPSNQRKS L
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