| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3347 |
|---|
| Symbol | |
|---|
| ID | 4255760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 3961744 |
|---|
| End bp | 3962295 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638124029 |
|---|
| Product | OstA family protein |
|---|
| Protein accession | YP_739386 |
|---|
| Protein GI | 114048836 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00730418 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.133661 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAA ATAACATATT ACTTGCCGGC CTAATGCTGA TGACAAGCAT GAGCGCCTTC
GCCAAGGTCG GTGACTTACA GCAAGAAGTT AAAATTAAGG CCGTCAGCCA AACTGCGGAC
ATTAAAAACA ATCAGATCAT TTTCTTCGGC CCCGTAGAAG TCACCCAAGG TTCGATTAAA
ATCCATGCGG ATCAACTACG TGCGTTTTCT GCCGAAGGGG ACAACAGCAA GATTTTAGTG
GCGACGGGTA ATCCTGCAAC CTACAGCCAG ATCCTCGACG ATGGGCGTCC AGCTTCTGCC
AGCGCCAAAG AAATTCGCTA TGAAATGGCG ACCCGCACCT TGACCTTAAC CGGCTCAGCC
ACCCTAGACC AAGCGGGTAG CCAAGTGACG GGGAATCTCA TCCGTTACAA TATTATTCAG
CAAAAACTGA TCGCTGAGAG CACGGGTAGC GGTGATGATC GCGTGATTAC CATTATTCAA
CCTGACAACT ATCAGGAAGA ACTCAAGAAT CAGCCCACGG ACAAACCTGT GAAAAAACAG
GACTCTCAAT GA
|
|---|
| Protein sequence | MKQNNILLAG LMLMTSMSAF AKVGDLQQEV KIKAVSQTAD IKNNQIIFFG PVEVTQGSIK
IHADQLRAFS AEGDNSKILV ATGNPATYSQ ILDDGRPASA SAKEIRYEMA TRTLTLTGSA
TLDQAGSQVT GNLIRYNIIQ QKLIAESTGS GDDRVITIIQ PDNYQEELKN QPTDKPVKKQ
DSQ
|
|---|
| |